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[180941_at]

Description K10E9.1 /REP_DB=WormBase Gene ID /WP=CE18050 /TR=O61779 /GB=AAC17021.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 52.8
(-2)
P 		46.1
(-3)
A 		48.2
(-2.7)
A 		85.1
(3)
A 		39
B 35.2
(-0.7)
P 		20.7
(-3)
A 		59.1
(3)
P 		50.9
(1.7)
A 		38
C 46.9
(-1.6)
A 		46.6
(-1.7)
A 		20.8
(-3)
A 		136.1
(3)
P 		115
avr 45
(-2.2) 		37.8
(-3) 		42.7
(-2.4) 		90.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 94.9
(3)
P 		46.9
(-1.2)
P 		48.8
(-1)
A 		40.4
(-1.8)
A 		26.4
(-3)
A 		31.7
(-2.5)
A 		69
B 37.5
(-0.3)
A 		44.6
(0.9)
A 		36.8
(-0.5)
A 		56.6
(3)
P 		27.3
(-2.1)
A 		22.3
(-3)
A 		34
C 62.3
(3)
P 		24.8
(-2.9)
A 		45.1
(0.3)
A 		24.4
(-3)
A 		49.6
(1)
A 		30.8
(-2)
A 		38
avr 64.9
(3) 		38.8
(-1.3) 		43.6
(-0.5) 		40.5
(-1) 		34.4
(-2) 		28.3
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.2
(3)
P 		10
(-3)
A 		12.6
(-1.3)
A 		12.5
(-1.4)
A 		9
B 11.2
(1.3)
P 		5.1
(-3)
A 		13.7
(3)
P 		10.8
(1)
A 		9
C 15.5
(0.2)
A 		13.4
(-0.7)
A 		7.3
(-3)
A 		22.9
(3)
P 		16
avr 15.3
(2.9) 		9.5
(-3) 		11.2
(-1.3) 		15.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 17.5
(3)
P 		16.7
(2.5)
P 		10.6
(-1.2)
A 		10.2
(-1.5)
A 		8
(-2.8)
A 		7.7
(-3)
A 		10
B 13.1
(1.3)
A 		14.9
(2.9)
A 		8.9
(-2.5)
A 		15
(3)
P 		11.1
(-0.5)
A 		8.3
(-3)
A 		7
C 23.1
(3)
P 		7.6
(-2.1)
A 		11.5
(-0.8)
A 		4.9
(-3)
A 		16.1
(0.7)
A 		10.3
(-1.2)
A 		18
avr 17.9
(3) 		13.1
(-0.2) 		10.3
(-2) 		10
(-2.2) 		11.7
(-1.1) 		8.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2590
Sequence Type Exemplar sequence
Representative Public ID K10E9.1 NCBI
Target Description K10E9.1 /REP_DB=WormBase Gene ID /WP=CE18050 /TR=O61779 /GB=AAC17021.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058291 NCBI Caenorhabditis elegans K10E9.1 (K10E9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000020204 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:186297:202379:1 11/11 None
SNAP00000020203 ENSEMBL cdna:SNAP chromosome:CEL140:I:200268:202447:1 11/11 None
K10E9.1 ENSEMBL cdna:known chromosome:CEL140:I:189654:202489:1 gene:K10E9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:189653-202489(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10E9.1
Entrez Gene 171612 Entrez gene
SwissProt O61779 EMBL-EBI
WormBase CE18050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17021 Hypothetical protein K10E9.1 [Caenorhabditis elegans] ref|NP_490692.1| K10E9.1 [Caenorhabditis elegans] 0.0
blast CAE74306 Hypothetical protein CBG22013 [Caenorhabditis briggsae] 0.0
blast AAC17020 Hypothetical protein K10E9.2 [Caenorhabditis elegans] ref|NP_490691.1| K10E9.2 [Caenorhabditis elegans] gb|AAA28148.1| putative 0.0
blast T18912 hypothetical protein C04F12.2 - Caenorhabditis elegans 0.0
blast AAC17021 Hypothetical protein K10E9.1 [Caenorhabditis elegans] ref|NP_490692.1| K10E9.1 [Caenorhabditis elegans] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.0E-126
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 7.8E-27
Pfam IPR004875 EMBL-EBI CENP-B protein 2.0E-5
Pfam IPR004875 EMBL-EBI CENP-B protein 9.1E-8
Sequence
Target Sequence 
>C. ELEGANS:180941_AT
atttctagcatgccgttggctccaacaatcgatcaaatgcggcttatgattatagccaac
gcgacggcaagcttcgagccacaatccgttgaagagcacgttgttcgagctgttcgagag
ctccgagagacgtcaaatcggcgaaaatccggtggaaatgtgaagggaattaatgaaaaa
acaacgagaatggtgaaactggccgagatgctcaccgagaataaagcatacgatgcggca
ataaacctgctcgacacgtgggagcacgagtgtctccaatggacatctgtcgctgccgaa
tcaatcgatatcgatttaattcgaatctgcaaacaacacgtgacgtgtcggtcgggagat
ccaagaatggcggacataaatctacgaacaatgcatccacgtgtcccggtgatgagtgac
ctggcgattgccgaatggtcactcgcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTAGCATGCCGTTGGCTCCAA 429 15 3769 Antisense
TAGCCAACGCGACGGCAAGCTTCGA 619 649 3821 Antisense
AGAGCACGTTGTTCGAGCTGTTCGA 20 69 3861 Antisense
GCTGTTCGAGAGCTCCGAGAGACGT 513 295 3877 Antisense
TGAAACTGGCCGAGATGCTCACCGA 117 573 3962 Antisense
GATGCGGCAATAAACCTGCTCGACA 163 415 4000 Antisense
TCCAATGGACATCTGTCGCTGCCGA 324 587 4043 Antisense
ACACGTGACGTGTCGGTCGGGAGAT 4 109 4104 Antisense
CATCCACGTGTCCCGGTGATGAGTG 568 209 4162 Antisense
GTGATGAGTGACCTGGCGATTGCCG 8 485 4177 Antisense
GCGATTGCCGAATGGTCACTCGCGT 446 291 4192 Antisense
Sequence Source Affymetrix Proprietary Database