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[180940_s_at]

Description C18H7.7 /REP_DB=WormBase Gene ID /WP=CE17432 /TR=Q9GZG0 /GB=AAF98612.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 38.1
(3)
A 		34.2
(2.1)
A 		11.9
(-3)
A 		25.5
(0.1)
A 		26
B 21.2
(-3)
A 		46.9
(-0.7)
A 		87.6
(3)
A 		24.9
(-2.7)
A 		66
C 40.1
(-0.5)
A 		51.4
(3)
A 		32.2
(-3)
A 		41.7
(-0)
A 		19
avr 33.1
(-1.9) 		44.2
(3) 		43.9
(2.9) 		30.7
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 71.1
(0.7)
A 		38.3
(-1.1)
A 		3
(-3)
A 		19.4
(-2.1)
A 		63.3
(0.3)
A 		112.4
(3)
P 		109
B 21.7
(-2.9)
A 		29.9
(-2.3)
A 		19.9
(-3)
A 		31.5
(-2.2)
A 		77.5
(1.2)
A 		102.9
(3)
P 		83
C 6.1
(-3)
A 		42
(-0.8)
A 		18.4
(-2.2)
A 		22.7
(-2)
A 		49.2
(-0.4)
A 		104
(3)
P 		98
avr 33
(-1.8) 		36.7
(-1.5) 		13.8
(-3) 		24.5
(-2.3) 		63.3
(0.2) 		106.4
(3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.9
(3)
A 		7.4
(-0.6)
A 		3.1
(-3)
A 		3.7
(-2.7)
A 		11
B 6.8
(-2.4)
A 		11.6
(-0.5)
A 		20.3
(3)
A 		5.3
(-3)
A 		15
C 13.3
(1.8)
A 		14.8
(3)
A 		11.2
(0.2)
A 		7
(-3)
A 		8
avr 11.3
(2.8) 		11.3
(2.8) 		11.5
(3) 		5.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 13.1
(-0.2)
A 		13.6
(-0.1)
A 		0.6
(-3)
A 		4.9
(-2)
A 		19.1
(1.1)
A 		27.4
(3)
P 		27
B 7.5
(-2.5)
A 		10
(-2.1)
A 		4.8
(-3)
A 		8.4
(-2.4)
A 		31.5
(1.8)
A 		38.4
(3)
P 		34
C 2.3
(-3)
A 		12.8
(-1.1)
A 		4.7
(-2.6)
A 		4.6
(-2.6)
A 		15.9
(-0.5)
A 		34.8
(3)
P 		33
avr 7.6
(-2.2) 		12.1
(-1.3) 		3.4
(-3) 		6
(-2.5) 		22.2
(0.7) 		33.5
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180940_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10928
Sequence Type Exemplar sequence
Representative Public ID C18H7.7 NCBI
Target Description C18H7.7 /REP_DB=WormBase Gene ID /WP=CE17432 /TR=Q9GZG0 /GB=AAF98612.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067553 NCBI Caenorhabditis elegans C18H7.7 (C18H7.7) mRNA, complete cds. 11/11 None
SNAP00000042863 ENSEMBL cdna:SNAP chromosome:CEL140:IV:595761:596301:-1 10/11 None
GENEFINDER00000042875 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:595761:596301:-1 10/11 None
C18H7.7 ENSEMBL cdna:known chromosome:CEL140:IV:595761:596441:-1 gene:C18H7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:595766-596447(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18H7.7
Entrez Gene 176887 Entrez gene
SwissProt Q9GZG0 EMBL-EBI
WormBase CE17432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98612 Hypothetical protein C18H7.7 [Caenorhabditis elegans] ref|NP_499954.1| C18H7.7 [Caenorhabditis elegans] 7.0E-99
blast AAF98612 Hypothetical protein C18H7.7 [Caenorhabditis elegans] ref|NP_499954.1| C18H7.7 [Caenorhabditis elegans] 3.0E-88
blast CAE60764 Hypothetical protein CBG04452 [Caenorhabditis briggsae] 4.0E-49
blast CAE60764 Hypothetical protein CBG04452 [Caenorhabditis briggsae] 9.0E-49
blast CAE60777 Hypothetical protein CBG04466 [Caenorhabditis briggsae] 7.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499954.1 1 13-35
C18H7.7 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:180940_S_AT
aaatgcttcgtggaattacccttctcttcttctccatcggcctttcttgtgcctgggatc
attttcaattcgatatcaccgtgttctgcgagctgaataatattcaggattataacttga
aaatcgaatgggtcgaggtggatagtcttaacggccaagaccagctctcccaaccgaaga
ttctcattctgggacccggccgacaaagcttctcccaagacggagccttgaacggcgatg
agatgttctcggctggatataagcccagagctcttataagtcatgattgtactagtgatc
ggaaaccagtggatcttcaattgactgtgaaacgtctctgtgaaattggacatctgtgcc
actaccgtatcatcaccgatctcaccaatcactggggaaaagaagacattgagccagcga
actttattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCTTCGTGGAATTACCCTTCT 356 119 62 Antisense
CCTTTCTTGTGCCTGGGATCATTTT 388 267 102 Antisense
TCGATATCACCGTGTTCTGCGAGCT 594 603 131 Antisense
TCTCCCAACCGAAGATTCTCATTCT 323 611 227 Antisense
AAAGCTTCTCCCAAGACGGAGCCTT 351 123 266 Antisense
GACGGAGCCTTGAACGGCGATGAGA 130 377 280 Antisense
TGAGATGTTCTCGGCTGGATATAAG 132 569 300 Antisense
AAGCCCAGAGCTCTTATAAGTCATG 75 149 322 Antisense
AAATTGGACATCTGTGCCACTACCG 159 115 404 Antisense
ACCGATCTCACCAATCACTGGGGAA 288 89 436 Antisense
GACATTGAGCCAGCGAACTTTATTC 446 369 466 Antisense
Sequence Source Affymetrix Proprietary Database