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[180939_s_at]

Description C01B7.7 /REP_DB=WormBase Gene ID /WP=CE06731 /TR=Q17552 /GB=AAA96118.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 50      6grp_total > 41      4grp_total > 13      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 122.9
(0.6)
P 		71.4
(-2.1)
M 		53.5
(-3)
A 		170
(3)
P 		117
B 132
(2.6)
P 		73.4
(-1.7)
P 		55.7
(-3)
A 		136.8
(3)
P 		81
C 120.6
(-0.4)
P 		60.9
(-2.6)
A 		48.4
(-3)
M 		215.2
(3)
P 		167
avr 125.2
(0.6) 		68.6
(-2.2) 		52.5
(-3) 		174
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 130
(0)
P 		84.1
(-1.7)
P 		211.1
(3)
P 		127.6
(-0.1)
P 		79.7
(-1.8)
P 		48
(-3)
A 		163
B 132.7
(-0.1)
P 		148.5
(0.7)
P 		191
(3)
P 		142.6
(0.4)
P 		119.4
(-0.8)
P 		78.1
(-3)
P 		113
C 105.2
(-1.2)
P 		183.3
(2)
P 		94.6
(-1.6)
P 		208.5
(3)
P 		60.2
(-3)
P 		93.3
(-1.7)
P 		148
avr 122.6
(0.2) 		138.6
(1.2) 		165.6
(3) 		159.6
(2.6) 		86.4
(-2.1) 		73.1
(-3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 44.8
(3)
P 		15.5
(-2.7)
M 		14
(-3)
A 		24.9
(-0.9)
P 		31
B 42.1
(3)
P 		18.1
(-1.9)
P 		12.9
(-3)
A 		29.2
(0.3)
P 		29
C 39.9
(3)
P 		17.5
(-2.8)
A 		16.9
(-3)
M 		36.3
(2.1)
P 		23
avr 42.3
(3) 		17
(-2.5) 		14.6
(-3) 		30.1
(0.4) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 24
(-0.8)
P 		29.9
(0.2)
P 		46
(3)
P 		32.4
(0.6)
P 		24.1
(-0.8)
P 		11.7
(-3)
A 		34
B 46.2
(2.1)
P 		49.4
(3)
P 		46.4
(2.1)
P 		37.8
(-0.4)
P 		48.5
(2.7)
P 		29.1
(-3)
P 		20
C 39
(0.2)
P 		55.9
(3)
P 		24.1
(-2.2)
P 		41.9
(0.7)
P 		19.5
(-3)
P 		31.2
(-1.1)
P 		36
avr 36.4
(0.5) 		45.1
(3) 		38.8
(1.2) 		37.4
(0.8) 		30.7
(-1.1) 		24
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180939_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12044
Sequence Type Exemplar sequence
Representative Public ID C01B7.7 NCBI
Target Description C01B7.7 /REP_DB=WormBase Gene ID /WP=CE06731 /TR=Q17552 /GB=AAA96118.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072867(11), NM_072881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072867 NCBI Caenorhabditis elegans C01B7.7 (C01B7.7) mRNA, complete cds. 11/11 None
NM_072881 NCBI Caenorhabditis elegans F07B7.13 (F07B7.13) mRNA, complete cds. 11/11 None
SNAP00000015098 ENSEMBL cdna:SNAP chromosome:CEL140:V:8866633:8867239:-1 10/11 None
GENEFINDER00000015152 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8865863:8867239:-1 10/11 None
SNAP00000041470 ENSEMBL cdna:SNAP chromosome:CEL140:V:8824539:8825145:-1 10/11 None
GENEFINDER00000041474 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8823769:8825249:-1 10/11 None
C01B7.7 ENSEMBL cdna:known chromosome:CEL140:V:8824453:8825145:-1 gene:C01B7.7 11/11 None
F07B7.13 ENSEMBL cdna:known chromosome:CEL140:V:8866547:8867239:-1 gene:F07B7.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8866547-8867240(-) 100.0 100.0
chrV:8824453-8825146(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C01B7.7
F07B7.13
Entrez Gene 182059 Entrez gene
184119 Entrez gene
SwissProt Q17552 EMBL-EBI
WormBase CE06731 Wormbase
CE06731 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84509 Hypothetical protein F07B7.13 [Caenorhabditis elegans] gb|AAA96118.1| Hypothetical protein C01B7.7 [Caenorhabditis elegans] ref|NP_505282.1| F07B7.13 [Caenorhabditis elegans] ref|NP_505268.1| C01B7.7 [Caenorhabditis elegans] 1.0E-116
blast AAK84509 Hypothetical protein F07B7.13 [Caenorhabditis elegans] gb|AAA96118.1| Hypothetical protein C01B7.7 [Caenorhabditis elegans] ref|NP_505282.1| F07B7.13 [Caenorhabditis elegans] ref|NP_505268.1| C01B7.7 [Caenorhabditis elegans] 1.0E-106
blast CAE57745 Hypothetical protein CBG00758 [Caenorhabditis briggsae] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.2E-93
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.8E-84
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.8E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041474 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:180939_S_AT
gtggtttttgcggcgatatcattttatctggtagattcggcaagtttagcaactgcagag
agcaaggatcacaactgcacacttggagatggacttaaagcattgtcatgtatttttaga
atgcaagatttcctggagaaaattgatgcacttgacctagacaataaagaagaaacaaat
gattttaaaggctcctgtgactctcttcacaactgttttgatgctcttgattgtcaaact
tcatcaactgatcacgaaacctctgatatttctggaatgatcaaaacctattgtgatacc
atcatttacatctccacaaagtttgttgaatgtagtgataaattagaagaaaaaagctcg
caatgctttgaaaactgggatccatttccaaatgatatcgaaaaagaaactgatcaaaag
aaaaaggaagaaatgagaaaatctgcatgccaaaacttttttggaaaagataattgtttg
aaagaagaaatcgtgagctcatgcagtgaaggagaatggataggatttagagatcatttc
gtttcattaagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTTTTTGCGGCGATATCATTTT 420 489 34 Antisense
GATTCGGCAAGTTTAGCAACTGCAG 284 433 67 Antisense
GGATCACAACTGCACACTTGGAGAT 329 511 99 Antisense
GAAAATTGATGCACTTGACCTAGAC 331 353 171 Antisense
TTTAAAGGCTCCTGTGACTCTCTTC 233 673 217 Antisense
GACTCTCTTCACAACTGTTTTGATG 647 373 232 Antisense
TCATCAACTGATCACGAAACCTCTG 4 621 274 Antisense
GATACCATCATTTACATCTCCACAA 385 425 328 Antisense
GAAAACTGGGATCCATTTCCAAATG 322 355 403 Antisense
GAAATCGTGAGCTCATGCAGTGAAG 1 361 520 Antisense
GAGATCATTTCGTTTCATTAAGCAA 230 397 563 Antisense
Sequence Source Affymetrix Proprietary Database