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[180938_at]

Description R04B5.11 /REP_DB=WormBase Gene ID /WP=CE06221 /TR=Q21708 /GB=CAA94847.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 52.1
(3)
A 		8.7
(-3)
A 		44.6
(2)
A 		16.5
(-1.9)
A 		43
B 44.5
(-3)
A 		46.5
(-2)
A 		56.2
(3)
A 		56.1
(2.9)
A 		12
C 13.2
(-2.8)
A 		34.2
(-1.4)
A 		10.4
(-3)
A 		99.4
(3)
A 		89
avr 36.6
(-1.5) 		29.8
(-3) 		37.1
(-1.4) 		57.3
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 64.7
(-1.1)
A 		41.3
(-3)
P 		45.9
(-2.6)
A 		43.4
(-2.8)
A 		65.1
(-1)
A 		114
(3)
A 		73
B 61.3
(1.1)
A 		18.5
(-2.4)
A 		45.9
(-0.2)
A 		10.8
(-3)
A 		85
(3)
A 		59.5
(0.9)
A 		74
C 49.5
(-1.5)
A 		109.7
(3)
A 		39.6
(-2.3)
A 		29.7
(-3)
A 		49.4
(-1.5)
A 		38
(-2.4)
A 		80
avr 58.5
(1.3) 		56.5
(1) 		43.8
(-0.8) 		28
(-3) 		66.5
(2.4) 		70.5
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19
(3)
A 		1.9
(-3)
A 		11.7
(0.4)
A 		2.4
(-2.8)
A 		17
B 14.2
(3)
A 		11.5
(-3)
A 		13
(0.3)
A 		11.9
(-2.1)
A 		3
C 4.4
(-2.6)
A 		9.8
(-0.2)
A 		3.6
(-3)
A 		16.8
(3)
A 		13
avr 12.5
(3) 		7.7
(-3) 		9.4
(-0.9) 		10.4
(0.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 11.9
(-2.4)
A 		14.7
(-1.4)
P 		10
(-3)
A 		11
(-2.7)
A 		19.6
(0.2)
A 		27.8
(3)
A 		18
B 21.3
(0.5)
A 		6.2
(-2.4)
A 		11.1
(-1.4)
A 		2.9
(-3)
A 		34.5
(3)
A 		22.2
(0.7)
A 		32
C 18.4
(-0.3)
A 		33.5
(3)
A 		10.1
(-2.1)
A 		6
(-3)
A 		16
(-0.8)
A 		12.7
(-1.5)
A 		28
avr 17.2
(0.8) 		18.1
(1.1) 		10.4
(-1.6) 		6.6
(-3) 		23.4
(3) 		20.9
(2.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11650
Sequence Type Exemplar sequence
Representative Public ID R04B5.11 NCBI
Target Description R04B5.11 /REP_DB=WormBase Gene ID /WP=CE06221 /TR=Q21708 /GB=CAA94847.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073192 NCBI Caenorhabditis elegans R04B5.11 (R04B5.11) mRNA, complete cds. 11/11 None
SNAP00000020539 ENSEMBL cdna:SNAP chromosome:CEL140:V:10093382:10093833:-1 11/11 None
GENEFINDER00000020552 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10093382:10093833:-1 11/11 None
R04B5.11 ENSEMBL cdna:known chromosome:CEL140:V:10093383:10093833:-1 gene:R04B5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10093381-10093833(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R04B5.11
Entrez Gene 187572 Entrez gene
SwissProt Q21708 EMBL-EBI
WormBase CE31975 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94847 Hypothetical protein R04B5.11 [Caenorhabditis elegans] ref|NP_505593.2| R04B5.11 [Caenorhabditis elegans] 8.0E-45
blast CAA94847 Hypothetical protein R04B5.11 [Caenorhabditis elegans] ref|NP_505593.2| R04B5.11 [Caenorhabditis elegans] 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:180938_AT
tggtgtctgtttcgttgaagccatcggctcaaaaatatgagcgggacaaaagacaggaag
atgctcaaaaagtgacacgacagaaagagaaacaaatcaagaaggtgggaattgaaaatc
aaaaatctacaaagactcgttacaagccacctaaaaaaggaaaaccttcgagaagaattg
aaatgcctccacgaactgaacaagttataattgatatacttgaaacgccaattgaaggat
ctccattgaatccagtcaccgatatgagaatcgtaccacttaccatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGTCTGTTTCGTTGAAGCCATC 246 553 14 Antisense
GGGACAAAAGACAGGAAGATGCTCA 105 495 56 Antisense
AAGTGACACGACAGAAAGAGAAACA 102 159 83 Antisense
ACAAAGACTCGTTACAAGCCACCTA 610 105 142 Antisense
AGAAGAATTGAAATGCCTCCACGAA 662 73 184 Antisense
TGAAATGCCTCCACGAACTGAACAA 215 571 192 Antisense
TTGATATACTTGAAACGCCAATTGA 263 703 224 Antisense
AAACGCCAATTGAAGGATCTCCATT 43 127 236 Antisense
ATCTCCATTGAATCCAGTCACCGAT 219 33 252 Antisense
GAATCCAGTCACCGATATGAGAATC 591 327 261 Antisense
GAGAATCGTACCACTTACCATCATC 97 391 279 Antisense
Sequence Source Affymetrix Proprietary Database