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[180937_at]

Description C02E7.8 /REP_DB=WormBase Gene ID /WP=CE07845 /TR=O16429 /GB=AAC24167.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 01      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 0.9
(-2.6)
A 		0.5
(-3)
A 		7.3
(3)
A 		3.1
(-0.7)
A 		7
B 0.8
(-1.2)
A 		0.9
(-0.9)
A 		0.3
(-3)
A 		2
(3)
A 		2
C 2
(-2.7)
A 		0.7
(-3)
A 		1.3
(-2.9)
A 		28.6
(3)
A 		28
avr 1.2
(-2.7) 		0.7
(-3) 		3
(-1.7) 		11.2
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.7
(3)
A 		0.7
(-2)
A 		0.8
(-1.8)
A 		0.7
(-2)
A 		0.5
(-2.5)
A 		0.3
(-3)
A 		2
B 0.3
(-2.9)
A 		0.2
(-3)
A 		0.9
(-2.4)
A 		6.8
(3)
A 		0.3
(-2.9)
A 		5.6
(1.9)
A 		7
C 6.6
(3)
A 		0.3
(-3)
A 		1.4
(-2)
A 		2
(-1.4)
A 		4
(0.5)
A 		3.8
(0.3)
A 		6
avr 3.2
(3) 		0.4
(-3) 		1
(-1.7) 		3.2
(3) 		1.6
(-0.4) 		3.2
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.3
(-2.3)
A 		0.1
(-3)
A 		1.9
(3)
A 		0.5
(-1.7)
A 		2
B 0.3
(1)
A 		0.2
(-1)
A 		0.1
(-3)
A 		0.4
(3)
A 		0
C 0.6
(-2.5)
A 		0.2
(-3)
A 		0.5
(-2.6)
A 		4.8
(3)
A 		5
avr 0.4
(-2.3) 		0.2
(-3) 		0.8
(-0.9) 		1.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.5
(3)
A 		0.2
(-1.5)
A 		0.2
(-1.5)
A 		0.2
(-1.5)
A 		0.2
(-1.5)
A 		0.1
(-3)
A 		0
B 0.1
(-3)
A 		0.1
(-3)
A 		0.2
(-2.7)
A 		1.8
(2.1)
A 		0.1
(-3)
A 		2.1
(3)
A 		2
C 2.4
(3)
A 		0.1
(-3)
A 		0.3
(-2.5)
A 		0.4
(-2.2)
A 		1.3
(0.1)
A 		1.3
(0.1)
A 		2
avr 1
(1.9) 		0.1
(-3) 		0.2
(-2.5) 		0.8
(0.8) 		0.5
(-0.8) 		1.2
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15242
Sequence Type Exemplar sequence
Representative Public ID C02E7.8 NCBI
Target Description C02E7.8 /REP_DB=WormBase Gene ID /WP=CE07845 /TR=O16429 /GB=AAC24167.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071920 NCBI Caenorhabditis elegans C02E7.8 (C02E7.8) mRNA, complete cds. 11/11 None
C02E7.8 ENSEMBL cdna:known chromosome:CEL140:V:4920156:4920604:-1 gene:C02E7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4920155-4920604(-) 91.95 100.0
Public Domain and Genome References
Gene Title
Ensembl C02E7.8
Entrez Gene 182115 Entrez gene
SwissProt O16429 EMBL-EBI
WormBase CE07845 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24167 Hypothetical protein C02E7.8 [Caenorhabditis elegans] ref|NP_504321.1| C02E7.8 [Caenorhabditis elegans] 1.0E-26
Sequence
Target Sequence 
>C. ELEGANS:180937_AT
aaaacggtttatgatcagtctgcggatgcaggaatacaggtctcatatgaacctgatcta
gtagtactacaaaaagttgctaattggtttgaaggtaatttatctatttcctctatccaa
atcaatatttgttccataatttttgactgtcatttggatttgttggcaaaattgatggat
tattttattattttaatttccaaaatcagaatcttcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACGGTTTATGATCAGTCTGCGG 414 129 22 Antisense
GTTTATGATCAGTCTGCGGATGCAG 636 445 28 Antisense
GCGGATGCAGGAATACAGGTCTCAT 289 293 43 Antisense
GGTCTCATATGAACCTGATCTAGTA 520 503 60 Antisense
ATGAACCTGATCTAGTAGTACTACA 241 43 68 Antisense
AGTTGCTAATTGGTTTGAAGGTAAT 167 65 96 Antisense
GGTAATTTATCTATTTCCTCTATCC 165 505 115 Antisense
ATCTATTTCCTCTATCCAAATCAAT 302 31 123 Antisense
TTGTTCCATAATTTTTGACTGTCAT 462 707 150 Antisense
TTTTTGACTGTCATTTGGATTTGTT 298 675 161 Antisense
AATTTCCAAAATCAGAATCTTCGAT 5 175 216 Antisense
Sequence Source Affymetrix Proprietary Database