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[180936_at]

Description ZC196.5 /REP_DB=WormBase Gene ID /WP=CE15074 /TR=O01627 /GB=AAB52295.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 63      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 90      6grp_total > 64      4grp_total > 01      6grp_high1_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 79.8
(-2.1)
P 		63.4
(-3)
P 		68.2
(-2.7)
P 		171.3
(3)
P 		108
B 83.2
(-2.7)
P 		76
(-3)
P 		110.8
(-1.4)
P 		206
(3)
P 		130
C 86.9
(-3)
P 		106
(-1.9)
P 		112.6
(-1.5)
P 		188.9
(3)
P 		102
avr 83.3
(-2.9) 		81.8
(-3) 		97.2
(-2.1) 		188.7
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 85
(-3)
P 		120.7
(-1.3)
P 		210.2
(3)
P 		142.5
(-0.2)
P 		145.2
(-0.1)
P 		110.4
(-1.8)
P 		125
B 85.2
(-3)
P 		118.9
(-0.1)
P 		154.1
(3)
P 		134.8
(1.3)
P 		129.3
(0.8)
P 		133
(1.2)
P 		69
C 66.5
(-3)
P 		130
(0.3)
P 		167.3
(2.2)
P 		133
(0.4)
P 		112.4
(-0.6)
P 		182.8
(3)
P 		116
avr 78.9
(-3) 		123.2
(-0.3) 		177.2
(3) 		136.8
(0.5) 		129
(0.1) 		142.1
(0.9) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 29.1
(3)
P 		13.8
(-3)
P 		17.8
(-1.4)
P 		25.1
(1.4)
P 		15
B 26.5
(-1.2)
P 		18.8
(-3)
P 		25.7
(-1.4)
P 		43.9
(3)
P 		25
C 28.8
(-3)
P 		30.5
(-2)
P 		39.2
(3)
P 		31.9
(-1.2)
P 		10
avr 28.1
(0.4) 		21
(-3) 		27.6
(0.1) 		33.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 15.7
(-3)
P 		42.9
(2.4)
P 		45.8
(3)
P 		36.1
(1.1)
P 		43.8
(2.6)
P 		26.9
(-0.8)
P 		30
B 29.6
(-3)
P 		39.6
(-0.4)
P 		37.4
(-1)
P 		35.7
(-1.4)
P 		52.5
(3)
P 		49.6
(2.2)
P 		23
C 24.7
(-3)
P 		39.7
(-0.5)
P 		42.6
(-0.1)
P 		26.8
(-2.7)
P 		36.4
(-1.1)
P 		61.2
(3)
P 		37
avr 23.3
(-3) 		40.7
(1.6) 		41.9
(1.9) 		32.9
(-0.5) 		44.2
(2.5) 		45.9
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180936_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11640
Sequence Type Exemplar sequence
Representative Public ID ZC196.5 NCBI
Target Description ZC196.5 /REP_DB=WormBase Gene ID /WP=CE15074 /TR=O01627 /GB=AAB52295.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072847 NCBI Caenorhabditis elegans ZC196.5 (ZC196.5) mRNA, complete cds. 11/11 None
GENEFINDER00000023108 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8732046:8735716:1 11/11 None
ZC196.5 ENSEMBL cdna:known chromosome:CEL140:V:8732046:8735365:1 gene:ZC196.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023100 5/11 Cross Hyb Matching Probes None
SNAP00000023101 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8732046-8735366(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC196.5
Entrez Gene 191104 Entrez gene
SwissProt O01627 EMBL-EBI
WormBase CE15074 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52295 Hypothetical protein ZC196.5 [Caenorhabditis elegans] ref|NP_505248.1| ZC196.5 [Caenorhabditis elegans] 0.0
blast CAE71563 Hypothetical protein CBG18514 [Caenorhabditis briggsae] 3.0E-33
blast CAE71563 Hypothetical protein CBG18514 [Caenorhabditis briggsae] 2.0E-32
blast CAB02996 Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] emb|CAA16278.1| Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] ref|NP_506335.1| Y2H9A.4 [Caenorhabditis elegans] 4.0E-29
blast CAB02996 Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] emb|CAA16278.1| Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] ref|NP_506335.1| Y2H9A.4 [Caenorhabditis elegans] 3.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 2.1E-104
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 1.9E-98
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505248.1 1 175-197
ZC196.5 1 175-197
GENEFINDER00000023108 1 175-197
Sequence
Target Sequence 
>C. ELEGANS:180936_AT
aagtcgtttcgaattccagcagagaattgtagccttccattcgtgcgttctactccgaat
tcgtttcgaagaaaaagaacaagagtggcaagattttctgaatggcctaagaaaaccact
agtttcaattttaaaatcatatgatgacttcaaaaatgagatcaaattttcaaagagtga
acttgatgaatccacaaagattagcattcagaatgaaggaagaatatttgcaatcaaagt
ttttagtgctcagaaaatgttatctgaagcattcgatttccttcaaaaccttacagaaga
attcgatggaaagatattcatcaaaatgataatgaaatcactaaacgatcaggaagctaa
atgtgatgacattggcaacgcattggttgaagttatgaactcagttaatgtcgggaaaca
agattataagattttggatgcagcagtactacgtttaaatcccaattcaattcctaatac
ttcacaactcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCGTTTCGAATTCCAGCAGAGA 25 159 1131 Antisense
GAGAATTGTAGCCTTCCATTCGTGC 373 391 1152 Antisense
CCATTCGTGCGTTCTACTCCGAATT 622 269 1167 Antisense
TGCGTTCTACTCCGAATTCGTTTCG 289 583 1174 Antisense
GTGGCAAGATTTTCTGAATGGCCTA 369 491 1215 Antisense
GTTATCTGAAGCATTCGATTTCCTT 441 447 1389 Antisense
GTGATGACATTGGCAACGCATTGGT 83 485 1493 Antisense
GATTTTGGATGCAGCAGTACTACGT 696 425 1560 Antisense
GCAGTACTACGTTTAAATCCCAATT 610 289 1573 Antisense
AAATCCCAATTCAATTCCTAATACT 201 119 1587 Antisense
CAATTCCTAATACTTCACAACTCAA 16 181 1598 Antisense
Sequence Source Affymetrix Proprietary Database