[Home] | [Total List]

[180935_s_at]

Description B0507.9 /REP_DB=WormBase Gene ID /WP=CE07768 /TR=Q22883 /GB=AAB04819.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      6grp_total > 82      4grp_total > 18      6grp_high1_sub > 04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 14.5
(-2.5)
A 		40.3
(2.4)
A 		12.1
(-3)
A 		43.7
(3)
A 		32
B 16.3
(-3)
A 		31.7
(-0.5)
A 		33.4
(-0.2)
A 		53.5
(3)
P 		37
C 20.6
(0.4)
A 		2.2
(-3)
A 		10.8
(-1.4)
A 		34.9
(3)
A 		33
avr 17.1
(-3) 		24.7
(-1.3) 		18.8
(-2.6) 		44
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 40.4
(2.4)
A 		31.9
(-0)
P 		41.1
(2.6)
P 		40.1
(2.3)
P 		42.7
(3)
A 		21.3
(-3)
A 		21
B 18.4
(-3)
A 		39.1
(-0.1)
P 		48.6
(1.2)
P 		35.2
(-0.7)
A 		61.4
(3)
P 		35.6
(-0.6)
P 		43
C 30.7
(-3)
P 		45.3
(1.9)
M 		43.6
(1.4)
P 		48.4
(3)
P 		39.7
(0.1)
P 		44.4
(1.6)
P 		18
avr 29.8
(-3) 		38.8
(-0) 		44.4
(1.8) 		41.2
(0.8) 		47.9
(3) 		33.8
(-1.7) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.3
(-0.8)
A 		8.8
(3)
A 		3.2
(-3)
A 		6.4
(0.4)
A 		6
B 5.2
(-3)
A 		7.8
(-0.5)
A 		7.7
(-0.6)
A 		11.4
(3)
P 		6
C 6.8
(3)
A 		0.6
(-3)
A 		3.8
(0.1)
A 		5.9
(2.1)
A 		6
avr 5.8
(-1.2) 		5.7
(-1.4) 		4.9
(-3) 		7.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.4
(-1.3)
A 		11.4
(1.8)
P 		8.9
(-0.1)
P 		10.2
(0.9)
P 		12.9
(3)
A 		5.2
(-3)
A 		8
B 6.4
(-3)
A 		13
(-0.9)
P 		11.8
(-1.3)
P 		9.3
(-2.1)
A 		25
(3)
P 		13.3
(-0.8)
P 		19
C 11.4
(-1)
P 		13.8
(1.7)
M 		11.1
(-1.4)
P 		9.7
(-3)
P 		12.9
(0.7)
P 		14.9
(3)
P 		5
avr 8.4
(-3) 		12.7
(0) 		10.6
(-1.4) 		9.7
(-2.1) 		16.9
(3) 		11.1
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180935_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11843
Sequence Type Exemplar sequence
Representative Public ID B0507.9 NCBI
Target Description B0507.9 /REP_DB=WormBase Gene ID /WP=CE07768 /TR=Q22883 /GB=AAB04819.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072858 NCBI Caenorhabditis elegans B0507.9 (B0507.9) mRNA, complete cds. 11/11 None
SNAP00000006056 ENSEMBL cdna:SNAP chromosome:CEL140:V:8767546:8768625:-1 11/11 None
GENEFINDER00000006071 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8767546:8768625:-1 11/11 None
B0507.9 ENSEMBL cdna:known chromosome:CEL140:V:8767540:8768625:-1 gene:B0507.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8767546-8768626(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0507.9
Entrez Gene 179253 Entrez gene
SwissProt Q22883 EMBL-EBI
WormBase CE07768 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04819 Hypothetical protein B0507.9 [Caenorhabditis elegans] ref|NP_505259.1| B0507.9 [Caenorhabditis elegans] 1.0E-139
blast CAE71578 Hypothetical protein CBG18532 [Caenorhabditis briggsae] 8.0E-35
blast CAE71576 Hypothetical protein CBG18530 [Caenorhabditis briggsae] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:180935_S_AT
gaggcaagcgccgatcatgaagagatgttatgtgagcttcgcaatgatttgagccaagtc
atgaaaatgggaatggtgaatctttcaatgcaaattattgctcaagagagaaacaaccgc
agaaaagttaatcagcatattatcaacataaaatcgaagacagaagaaattgacaagttt
ttccagcgagcaatttctgtgcttggtgcaccgccaggctatcctgcgaaaaaggaagaa
aaagcgaaaactaagaactatttgatccagtttggagaagttcttctttcaattagtacg
atggtcactaatctggagcaaagcttggcttgttacgaactaaaagaggttttgatgaat
ggcatgatcagccaaatccgaactcaaatatccgatttcaacaaagtgattccgaatttc
aaacggatcctaaacagtgaaaatcaggaaattgatccagataattatgaaaaatttgtg
gatatgaaaaaacgattattcgcaatggttaattgtttgcatttgatttccgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCAAGCGCCGATCATGAAGAGA 383 405 154 Antisense
GAGATGTTATGTGAGCTTCGCAATG 577 395 175 Antisense
GCTTCGCAATGATTTGAGCCAAGTC 621 305 189 Antisense
GACAAGTTTTTCCAGCGAGCAATTT 495 365 325 Antisense
GCAATTTCTGTGCTTGGTGCACCGC 289 323 343 Antisense
ACCGCCAGGCTATCCTGCGAAAAAG 83 91 363 Antisense
GTTCTTCTTTCAATTAGTACGATGG 73 443 433 Antisense
GTACGATGGTCACTAATCTGGAGCA 407 459 449 Antisense
CAAAGCTTGGCTTGTTACGAACTAA 136 193 472 Antisense
GGCATGATCAGCCAAATCCGAACTC 95 537 514 Antisense
AATTGTTTGCATTTGATTTCCGAAA 404 179 664 Antisense
Sequence Source Affymetrix Proprietary Database