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[180934_at]

Description K10B3.1 /REP_DB=WormBase Gene ID /WP=CE07364 /TR=Q21411 /GB=AAB53870.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 72      6grp_total > 92      4grp_total > 33      6grp_highest_sub > 04_05      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 443
1 2 3 4 range
A 196.8
(-3)
P 		510.7
(3)
P 		295.6
(-1.1)
P 		408.6
(1)
P 		314
B 169
(-3)
P 		399.2
(1.4)
P 		480.3
(3)
P 		431.9
(2.1)
P 		311
C 234.1
(-3)
P 		489.6
(1.1)
P 		612.1
(3)
P 		392.9
(-0.5)
P 		378
avr 200
(-3) 		466.5
(3) 		462.7
(2.9) 		411.1
(1.8) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 541
1 2 3 4 5 6 range
A 219.9
(-2.8)
P 		314.8
(-1.3)
P 		532.3
(2.2)
P 		583.2
(3)
P 		491.7
(1.5)
P 		209.7
(-3)
P 		374
B 328.3
(-1.9)
P 		348.2
(-1.3)
P 		497
(2.6)
P 		427.3
(0.8)
P 		511.6
(3)
P 		285.1
(-3)
P 		227
C 528.4
(0.3)
P 		330.8
(-2.1)
P 		382.7
(-1.5)
P 		525.7
(0.2)
P 		751.1
(3)
P 		260.8
(-3)
P 		490
avr 358.9
(-1.1) 		331.3
(-1.6) 		470.7
(0.9) 		512.1
(1.7) 		584.8
(3) 		251.9
(-3) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 71.6
(-1.6)
P 		110.9
(3)
P 		77.3
(-0.9)
P 		59.8
(-3)
P 		51
B 53.9
(-3)
P 		98.6
(1.7)
P 		111.3
(3)
P 		92
(1)
P 		57
C 77.5
(-2.5)
P 		140.8
(0)
P 		213.3
(3)
P 		66.2
(-3)
P 		147
avr 67.7
(-3) 		116.8
(1.4) 		134
(3) 		72.7
(-2.5) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 40.5
(-3)
P 		112
(1)
P 		115.9
(1.2)
P 		147.9
(3)
P 		148.4
(3)
P 		51.1
(-2.4)
P 		108
B 114.2
(-2.5)
P 		115.9
(-2.4)
P 		120.7
(-2.1)
P 		113.2
(-2.6)
P 		207.9
(3)
P 		106.3
(-3)
P 		102
C 195.9
(1.2)
P 		100.9
(-2.5)
P 		97.4
(-2.6)
P 		105.7
(-2.3)
P 		243
(3)
P 		87.3
(-3)
P 		156
avr 116.9
(-1.2) 		109.6
(-1.6) 		111.3
(-1.5) 		122.3
(-0.9) 		199.8
(3) 		81.6
(-3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180934_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18095
Sequence Type Exemplar sequence
Representative Public ID K10B3.1 NCBI
Target Description K10B3.1 /REP_DB=WormBase Gene ID /WP=CE07364 /TR=Q21411 /GB=AAB53870.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029611 NCBI Caenorhabditis elegans K10B3.1a (K10B3.1) mRNA, complete cds. 11/11 None
K10B3.1a ENSEMBL cdna:known chromosome:CEL140:X:3135496:3135770:1 gene:K10B3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029612 7/11 Cross Hyb Matching Probes None
K10B3.1b 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
187247 2 1 NM_001029611 180934_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3135495-3135770(+) 100.0 100.0
Public Domain and Genome References
Ensembl K10B3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53870 Hypothetical protein K10B3.1a [Caenorhabditis elegans] ref|NP_001024782.1| K10B3.1a [Caenorhabditis elegans] 1.0E-35
blast NP_001024783 K10B3.1b [Caenorhabditis elegans] 1.0E-18
blast CAE68384 Hypothetical protein CBG14140 [Caenorhabditis briggsae] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:180934_AT
aagctttatctcaacaacgaaacgcagaaaaaacagcgaaagctaagaaggccgtgggaa
gtgatcaaaagaatgctgcaatggcatctctgcaccacaagtgcaccgtttgcatggtac
gtaataaaaagcaatttcctttctacgtaacgcgtctgatctttcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTTTATCTCAACAACGAAACGC 563 149 32 Antisense
CAGCGAAAGCTAAGAAGGCCGTGGG 250 201 65 Antisense
GAAGGCCGTGGGAAGTGATCAAAAG 158 333 78 Antisense
GTGATCAAAAGAATGCTGCAATGGC 690 483 92 Antisense
ATGCTGCAATGGCATCTCTGCACCA 283 43 104 Antisense
TGGCATCTCTGCACCACAAGTGCAC 193 545 113 Antisense
GCACCACAAGTGCACCGTTTGCATG 411 315 123 Antisense
AAGTGCACCGTTTGCATGGTACGTA 345 153 130 Antisense
CACCGTTTGCATGGTACGTAATAAA 345 201 135 Antisense
TTTCCTTTCTACGTAACGCGTCTGA 662 669 166 Antisense
TACGTAACGCGTCTGATCTTTCACT 27 649 175 Antisense
Sequence Source Affymetrix Proprietary Database