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[180933_at]

Description H06A10.1 /REP_DB=WormBase Gene ID /WP=CE18805 /TR=Q9XTR0 /GB=CAB16924.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      6grp_total > 81      4grp_total > 49      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 33.9
(-3)
A 		249.5
(3)
P 		214
(2)
P 		53.4
(-2.5)
A 		216
B 34.4
(-2.6)
A 		259.1
(3)
P 		245.8
(2.7)
P 		16.2
(-3)
A 		243
C 21.2
(-2.8)
A 		274.7
(3)
P 		223.6
(1.8)
P 		11.3
(-3)
A 		263
avr 29.8
(-2.9) 		261.1
(3) 		227.8
(2.1) 		27
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1167
1 2 3 4 5 6 range
A 51.7
(-3)
A 		253
(-2)
P 		369.6
(-1.4)
P 		1211.4
(3)
P 		712.7
(0.4)
P 		101.3
(-2.7)
P 		1160
B 55.1
(-3)
A 		267.6
(-1.7)
P 		367.8
(-1)
P 		1001.8
(3)
P 		656.7
(0.8)
P 		99.6
(-2.7)
P 		947
C 64.6
(-3)
P 		310.9
(-1.7)
P 		344.9
(-1.5)
P 		1218.3
(3)
P 		660.2
(0.1)
P 		125.9
(-2.7)
P 		1154
avr 57.1
(-3) 		277.2
(-1.8) 		360.8
(-1.3) 		1143.8
(3) 		676.5
(0.4) 		108.9
(-2.7) 		1087
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 12.3
(-2.4)
A 		54.2
(2.8)
P 		55.9
(3)
P 		7.8
(-3)
A 		48
B 11
(-2.2)
A 		64
(3)
P 		57
(2.3)
P 		3.4
(-3)
A 		61
C 7
(-2.6)
A 		79
(3)
P 		77.9
(2.9)
P 		1.9
(-3)
A 		77
avr 10.1
(-2.4) 		65.7
(3) 		63.6
(2.8) 		4.4
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 9.5
(-3)
A 		90
(-1.4)
P 		80.5
(-1.6)
P 		307.2
(3)
P 		215.1
(1.1)
P 		24.7
(-2.7)
P 		298
B 19.2
(-3)
A 		89.1
(-1.3)
P 		89.3
(-1.3)
P 		265.3
(3)
P 		266.8
(3)
P 		37.2
(-2.6)
P 		248
C 23.9
(-3)
P 		94.9
(-1.1)
P 		87.8
(-1.3)
P 		245
(3)
P 		213.6
(2.1)
P 		42.2
(-2.5)
P 		221
avr 17.5
(-3) 		91.3
(-1.3) 		85.9
(-1.4) 		272.5
(3) 		231.8
(2) 		34.7
(-2.6) 		255
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17313
Sequence Type Exemplar sequence
Representative Public ID H06A10.1 NCBI
Target Description H06A10.1 /REP_DB=WormBase Gene ID /WP=CE18805 /TR=Q9XTR0 /GB=CAB16924.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077854(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077854 NCBI Caenorhabditis elegans H06A10.1 (H06A10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000033182 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13507631:13509898:1 11/11 None
H06A10.1 ENSEMBL cdna:known chromosome:CEL140:X:13507631:13509898:1 gene:H06A10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033175 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13507630-13509898(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H06A10.1
Entrez Gene 186696 Entrez gene
SwissProt Q9XTR0 EMBL-EBI
WormBase CE18805 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16924 Hypothetical protein H06A10.1 [Caenorhabditis elegans] ref|NP_510255.1| H06A10.1 [Caenorhabditis elegans] 1.0E-167
blast CAE63137 Hypothetical protein CBG07437 [Caenorhabditis briggsae] 1.0E-116
blast NP_508959 W01C8.5 [Caenorhabditis elegans] gb|AAG49388.1| XG314 [Caenorhabditis elegans] gb|AAG00025.2| Hypothetical protein W01C8.5 [Caenorhabditis elegans] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:180933_AT
acggcgaatggctctcaaaactggtgtcattgagtcacgagcagcaccaaatagacacgc
ggctaattgtcaaaatgacgggctcagctgcgcaatggaagcaatttgcagttgttgatt
caaatgggaatacattggcatctgtaaacatgaaccaaaaaccatcagcaccattttgtt
gttttgaaagtgaagcggatatggggttgttcggagagtacggaattatttcggacccca
tagaagtgatcgactccaggacactaaaaattccaaagttttcatataaagcatcgcaaa
caccagacggatacttctttgccggagccggatcagaaattgatcaaaaatctgggaaga
aagctgctattctgcgaagtgatcaaaccctcaattattgccctatgctgaaagatatta
ccgatcaggatataattatacgcttagaccagagccaaacaatttacgacattgaatgga
ttagtgtattttgctacaagtattcacacgactttggccacttggatatgggacttgttg
agaatgaagaacaggttccaccttatattccggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGCGAATGGCTCTCAAAACTGGT 616 95 272 Antisense
GTGTCATTGAGTCACGAGCAGCACC 555 485 295 Antisense
GAGCAGCACCAAATAGACACGCGGC 699 389 310 Antisense
AAAATGACGGGCTCAGCTGCGCAAT 306 133 343 Antisense
ACCATCAGCACCATTTTGTTGTTTT 193 87 432 Antisense
CGGACCCCATAGAAGTGATCGACTC 371 243 503 Antisense
AGACGGATACTTCTTTGCCGGAGCC 431 71 576 Antisense
GAAAGCTGCTATTCTGCGAAGTGAT 161 359 630 Antisense
AACCCTCAATTATTGCCCTATGCTG 68 147 657 Antisense
CACACGACTTTGGCCACTTGGATAT 126 195 776 Antisense
ACAGGTTCCACCTTATATTCCGGAT 682 105 822 Antisense
Sequence Source Affymetrix Proprietary Database