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[180932_at]

Description W03G1.9 /REP_DB=WormBase Gene ID /WP=CE17287 /TR=Q9UAY7 /GB=AAD14748.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 21      6grp_total > 64      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 40
(-3)
P 		88.7
(3)
P 		64.1
(-0)
P 		78.8
(1.8)
P 		49
B 72.2
(3)
P 		67.5
(2.2)
P 		44.8
(-1.5)
P 		35.3
(-3)
A 		37
C 52.2
(-2.2)
P 		70.6
(-1.5)
P 		31.9
(-3)
P 		183.9
(3)
P 		152
avr 54.8
(-2.1) 		75.6
(0.3) 		46.9
(-3) 		99.3
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 60.9
(2.7)
M 		31.3
(-3)
A 		51.1
(0.8)
A 		39.7
(-1.4)
M 		60.3
(2.5)
P 		62.7
(3)
P 		31
B 31.3
(-1.9)
P 		27.1
(-3)
A 		46.6
(2)
M 		43.9
(1.3)
A 		50.6
(3)
P 		41.8
(0.8)
A 		24
C 31.8
(-3)
P 		60
(3)
P 		57.7
(2.5)
P 		42.9
(-0.6)
A 		40.4
(-1.2)
P 		47.6
(0.4)
M 		28
avr 41.3
(-2.1) 		39.5
(-3) 		51.8
(3) 		42.2
(-1.7) 		50.4
(2.3) 		50.7
(2.5) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 14.6
(-0.6)
P 		19.3
(3)
P 		16.8
(1.1)
P 		11.5
(-3)
P 		8
B 23
(3)
P 		16.7
(0.6)
P 		10.4
(-1.9)
P 		7.5
(-3)
A 		16
C 17.3
(-1.1)
P 		20.3
(-0.2)
P 		11.1
(-3)
P 		31
(3)
P 		20
avr 18.3
(2.5) 		18.8
(3) 		12.8
(-3) 		16.7
(0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 11.2
(-2.2)
M 		11.1
(-2.3)
A 		11.1
(-2.3)
A 		10.1
(-3)
M 		18.2
(3)
P 		15.3
(0.9)
P 		8
B 10.9
(-2)
P 		9
(-3)
A 		11.3
(-1.8)
M 		11.6
(-1.7)
A 		20.6
(3)
P 		15.6
(0.4)
A 		12
C 11.8
(-1)
P 		18.3
(3)
P 		14.7
(0.8)
P 		8.6
(-3)
A 		13.1
(-0.2)
P 		15.9
(1.5)
M 		10
avr 11.3
(-2) 		12.8
(-0.7) 		12.4
(-1.1) 		10.1
(-3) 		17.3
(3) 		15.6
(1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11005
Sequence Type Exemplar sequence
Representative Public ID W03G1.9 NCBI
Target Description W03G1.9 /REP_DB=WormBase Gene ID /WP=CE17287 /TR=Q9UAY7 /GB=AAD14748.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000041684 ENSEMBL cdna:SNAP chromosome:CEL140:IV:529178:529652:-1 9/11 None
GENEFINDER00000041693 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:529178:529652:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041683 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:529177-531047(-) 66.3 89.58
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T34004 hypothetical protein W03G1.9 - Caenorhabditis elegans 3.0E-65
blast AAK68161 Hypothetical protein C04G6.7 [Caenorhabditis elegans] ref|NP_494943.1| C04G6.7 [Caenorhabditis elegans] 2.0E-9
blast T29598 hypothetical protein C04G6.7 - Caenorhabditis elegans 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.0E-6
Sequence
Target Sequence 
>C. ELEGANS:180932_AT
gaaccaagggtgtcaaggcccgtgtcccgtttgtcccgttgtcacgttttttgagtgttt
tcacgggaacggaacgtcccgctgtcccgttttttgttttcacgggaacnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnntgctctacgtgacttacggccgtgttccagagccaaagaacaagt
tcgccctgttcaagcttccttttcttgcaaagaaaaaaataattgaaaaaatggatgtac
aacaacaagtgaatctgaagtttgtgtcgagcaattcaagagccatcacaaactacctaa
caaaccaaccaaactacatcttgagtatgaatttctcgcatgacctggtggtattggcag
tttctcactcgaacgaaagagggacaaatcgtttattgatgcagctcgctgttcatgccg
aagagaataagaaatctgaattctggttgccagttccaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCAAGGGTGTCAAGGCCCGTGT 182 333 215 Antisense
GTCCCGTTGTCACGTTTTTTGAGTG 255 475 247 Antisense
TTACGGCCGTGTTCCAGAGCCAAAG 361 667 423 Antisense
GAACAAGTTCGCCCTGTTCAAGCTT 261 351 447 Antisense
GTTCAAGCTTCCTTTTCTTGCAAAG 510 445 462 Antisense
AAGAGCCATCACAAACTACCTAACA 150 155 552 Antisense
TAACAAACCAACCAAACTACATCTT 688 627 572 Antisense
GTATGAATTTCTCGCATGACCTGGT 116 455 599 Antisense
TATTGGCAGTTTCTCACTCGAACGA 207 663 626 Antisense
TGATGCAGCTCGCTGTTCATGCCGA 694 565 671 Antisense
TCTGAATTCTGGTTGCCAGTTCCAA 335 609 709 Antisense
Sequence Source Affymetrix Proprietary Database