[Home] | [Total List]

[180931_at]

Description F44D12.6 /REP_DB=WormBase Gene ID /WP=CE03330 /TR=Q20394 /GB=CAA92602.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 30.1
(-1)
A 		10.4
(-3)
A 		41.3
(0.2)
A 		69
(3)
A 		59
B 42.4
(3)
A 		32.7
(0.4)
A 		19.6
(-3)
A 		34.6
(0.9)
A 		23
C 29.9
(-3)
A 		44.5
(-0.8)
A 		40.4
(-1.4)
A 		69.5
(3)
A 		40
avr 34.1
(-2) 		29.2
(-3) 		33.8
(-2) 		57.7
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 27.2
(-1.8)
A 		47.4
(0.2)
A 		35.5
(-0.9)
A 		14.6
(-3)
A 		75.4
(3)
A 		66.2
(2.1)
A 		61
B 34
(-0.4)
A 		23
(-1.5)
A 		26
(-1.2)
A 		9.2
(-3)
A 		66.1
(3)
A 		36.5
(-0.1)
A 		57
C 32.6
(-1.4)
A 		37.4
(-1)
A 		30
(-1.6)
A 		12.9
(-3)
A 		43.3
(-0.6)
A 		88.2
(3)
A 		75
avr 31.3
(-0.8) 		35.9
(-0.2) 		30.5
(-0.9) 		12.2
(-3) 		61.6
(2.8) 		63.6
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11
(3)
A 		2.3
(-3)
A 		10.8
(2.9)
A 		10.1
(2.4)
A 		9
B 13.5
(3)
A 		8.1
(-0.6)
A 		4.5
(-3)
A 		7.4
(-1.1)
A 		9
C 9.9
(-3)
A 		12.8
(1.1)
A 		14.1
(3)
A 		11.7
(-0.4)
A 		4
avr 11.5
(3) 		7.7
(-3) 		9.8
(0.3) 		9.7
(0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5
(-2.6)
A 		16.8
(1.1)
A 		7.7
(-1.7)
A 		3.7
(-3)
A 		22.7
(3)
A 		16.1
(0.9)
A 		19
B 11.8
(-0.7)
A 		7.7
(-1.7)
A 		6.3
(-2)
A 		2.4
(-3)
A 		26.9
(3)
A 		13.6
(-0.3)
A 		25
C 12.1
(-0.9)
A 		11.4
(-1)
A 		7.6
(-1.9)
A 		2.6
(-3)
A 		14
(-0.5)
A 		29.5
(3)
A 		27
avr 9.6
(-0.8) 		12
(-0) 		7.2
(-1.6) 		2.9
(-3) 		21.2
(3) 		19.7
(2.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8563
Sequence Type Exemplar sequence
Representative Public ID F44D12.6 NCBI
Target Description F44D12.6 /REP_DB=WormBase Gene ID /WP=CE03330 /TR=Q20394 /GB=CAA92602.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069411 NCBI Caenorhabditis elegans F44D12.6 (F44D12.6) mRNA, complete cds. 11/11 None
SNAP00000020517 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10033335:10034776:1 11/11 None
GENEFINDER00000020528 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10033335:10034776:1 11/11 None
F44D12.6 ENSEMBL cdna:known chromosome:CEL140:IV:10033335:10034776:1 gene:F44D12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10033340-10034782(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44D12.6
Entrez Gene 260110 Entrez gene
SwissProt Q20394 EMBL-EBI
WormBase CE03330 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92602 Hypothetical protein F44D12.6 [Caenorhabditis elegans] ref|NP_501812.1| F44D12.6 [Caenorhabditis elegans] 1.0E-168
blast CAE71192 Hypothetical protein CBG18049 [Caenorhabditis briggsae] 4.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501812.1 1 7-29
F44D12.6 1 7-29
SNAP00000020517 1 7-29
GENEFINDER00000020528 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180931_AT
tgcggcaaaagaagctgcgctccgtcataaaaccaatcaatacttcccaaagtgggaaat
ccaaacacggagaataacgaatgggaccacgaaggaagagatgaagaagatggttgcgca
attgccacaacatccgaaacaacggtacaggaaggagttgagagttcccgtgttggataa
gagaaacgaaaaatggaaagacgcccatgttcattggcgagagactggtttggcctttat
tatccgaagcaatgatgcatgccgatcgaaagatgatggaggttgtgacacgatcgatag
ccaaaatagtaaagaagaccaggaaagatcgaaggtgaactctgaaatgccgttgtccga
caagaagcccgaccgaaaaccgcaagaaacacctcgtcgcagcaaacaacggactcctgg
tccaatgatgcctactcaaaaatcatccaaaaaatcagcaaaagaacggaaattggagcc
aactcaggaggagaccatgaagagcggcggcggtggtgcaaaatcgggacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGCAAAAGAAGCTGCGCTCCGT 63 583 273 Antisense
TGCGCTCCGTCATAAAACCAATCAA 627 581 288 Antisense
TGGTTGCGCAATTGCCACAACATCC 412 551 383 Antisense
GGAGTTGAGAGTTCCCGTGTTGGAT 531 515 426 Antisense
GACTGGTTTGGCCTTTATTATCCGA 522 375 495 Antisense
GAACTCTGAAATGCCGTTGTCCGAC 251 349 609 Antisense
GAAAACCGCAAGAAACACCTCGTCG 586 353 647 Antisense
GCAGCAAACAACGGACTCCTGGTCC 379 313 671 Antisense
CTGGTCCAATGATGCCTACTCAAAA 65 241 689 Antisense
AGGAGACCATGAAGAGCGGCGGCGG 594 55 761 Antisense
CGGCGGTGGTGCAAAATCGGGACGA 60 243 780 Antisense
Sequence Source Affymetrix Proprietary Database