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[180929_s_at]

Description C10G8.8 /REP_DB=WormBase Gene ID /WP=CE08079 /TR=Q94167 /GB=AAB09175.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_high_8_8 > 16      6grp_highest_nonorm > 81      6grp_total > 52      4grp_total > 47      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 221.3
(3)
P 		209
(2)
P 		181
(-0.2)
P 		146.7
(-3)
A 		75
B 174.6
(1.1)
P 		178.9
(1.5)
P 		132.9
(-3)
P 		193.7
(3)
P 		61
C 298.2
(3)
P 		161.8
(-3)
P 		234
(0.2)
P 		201.4
(-1.3)
P 		136
avr 231.4
(3) 		183.2
(-2.7) 		182.6
(-2.8) 		180.6
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 189.4
(-1.6)
P 		217.7
(-1.1)
P 		431.4
(3)
P 		263.1
(-0.2)
P 		238.8
(-0.7)
P 		118.7
(-3)
P 		313
B 273.8
(1.4)
P 		225.1
(-1.4)
P 		301.8
(3)
P 		217.5
(-1.8)
P 		218.9
(-1.8)
P 		197.3
(-3)
P 		105
C 251.4
(0.9)
P 		273.8
(2.3)
P 		267.6
(1.9)
P 		283.9
(3)
P 		231.7
(-0.4)
P 		191.7
(-3)
P 		92
avr 238.2
(-0.5) 		238.9
(-0.5) 		333.6
(3) 		254.8
(0.1) 		229.8
(-0.8) 		169.2
(-3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 80.6
(3)
P 		45.4
(-0.6)
P 		47.3
(-0.4)
P 		21.5
(-3)
A 		59
B 55.7
(3)
P 		44.2
(0.2)
P 		30.8
(-3)
P 		41.3
(-0.5)
P 		25
C 98.7
(3)
P 		46.5
(-1.8)
P 		81.6
(1.4)
P 		34
(-3)
P 		65
avr 78.3
(3) 		45.4
(-1.3) 		53.2
(-0.3) 		32.3
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 34.9
(-2.4)
P 		77.4
(1.5)
P 		93.9
(3)
P 		66.7
(0.5)
P 		72
(1)
P 		28.9
(-3)
P 		65
B 95.3
(3)
P 		74.9
(-0.2)
P 		73.3
(-0.5)
P 		57.6
(-3)
P 		88.9
(2)
P 		73.6
(-0.5)
P 		38
C 93.2
(3)
P 		83.6
(1.4)
P 		68.1
(-1.2)
P 		57.1
(-3)
P 		75
(-0)
P 		64.2
(-1.8)
P 		36
avr 74.5
(1.9) 		78.6
(3) 		78.4
(2.9) 		60.5
(-1.7) 		78.6
(3) 		55.6
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180929_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11688
Sequence Type Exemplar sequence
Representative Public ID C10G8.8 NCBI
Target Description C10G8.8 /REP_DB=WormBase Gene ID /WP=CE08079 /TR=Q94167 /GB=AAB09175.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072020(11), NM_182366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072020 NCBI Caenorhabditis elegans C10G8.8a (C10G8.8) mRNA, complete cds. 11/11 None
NM_182366 NCBI Caenorhabditis elegans C10G8.8b (C10G8.8) mRNA, complete cds. 11/11 None
SNAP00000038005 ENSEMBL cdna:SNAP chromosome:CEL140:V:5324788:5328218:-1 11/11 None
GENEFINDER00000038007 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5324788:5328218:-1 11/11 None
C10G8.8a ENSEMBL cdna:known chromosome:CEL140:V:5324615:5328282:-1 gene:C10G8.8 11/11 None
C10G8.8b.1 ENSEMBL cdna:known chromosome:CEL140:V:5324788:5328195:-1 gene:C10G8.8 11/11 None
C10G8.8b.2 ENSEMBL cdna:known chromosome:CEL140:V:5324788:5326963:-1 gene:C10G8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5324787-5328218(-) 100.0 100.0
Public Domain and Genome References
Ensembl C10G8.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09175 Hypothetical protein C10G8.8a [Caenorhabditis elegans] ref|NP_504421.1| C10G8.8a [Caenorhabditis elegans] 2.0E-99
blast CAE62633 Hypothetical protein CBG06763 [Caenorhabditis briggsae] 2.0E-62
blast AAN84874 Hypothetical protein C10G8.8b [Caenorhabditis elegans] ref|NP_872166.1| C10G8.8b [Caenorhabditis elegans] 5.0E-56
blast AAB09175 Hypothetical protein C10G8.8a [Caenorhabditis elegans] ref|NP_504421.1| C10G8.8a [Caenorhabditis elegans] 5.0E-56
Sequence
Target Sequence 
>C. ELEGANS:180929_S_AT
tgaccgcttccgatggagaggctcaaagagggcagagaagacgtggaagtcagaaagatc
agaaggatcaaaatgggaaacagcagattcagaagaaggatggaaaaggaaagagccagc
cggttggagataaagttaatgaggataagaagaaacaaaagagtaatcgtacgcgtcgtg
agagtgataactatgcagttcgaaaagttctccacagaatagttgacaaagtatgttgga
tggagcgagttgagaagagaagagcaaaaaatgaactgctcggggagcaagaagaattgg
aagaggagccgaagagtgaagatgaggttgatgtggaagatcacgatcaagaagaatgcc
aagatcaaagaacagagactcaaactccaaaaaattctgagccggctcaagaagaagaaa
cccgtgcagaggaatctaaagataaagaaaataccgagaattctgatgaaacaaaagaag
aatcttccgaagatgtaaaagaagacagtaatcagaatgtgatcagtctggtccgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACCGCTTCCGATGGAGAGGCTCA 102 571 596 Antisense
GGAAAGAGCCAGCCGGTTGGAGATA 509 525 703 Antisense
AAAGAGTAATCGTACGCGTCGTGAG 655 121 753 Antisense
GTACGCGTCGTGAGAGTGATAACTA 510 457 764 Antisense
AAAGTTCTCCACAGAATAGTTGACA 526 119 799 Antisense
CAAAGTATGTTGGATGGAGCGAGTT 265 193 822 Antisense
AAGAACAGAGACTCAAACTCCAAAA 277 151 963 Antisense
TCCAAAAAATTCTGAGCCGGCTCAA 114 585 981 Antisense
GAGCCGGCTCAAGAAGAAGAAACCC 554 83 994 Antisense
GAAGAAACCCGTGCAGAGGAATCTA 564 337 1009 Antisense
GAATGTGATCAGTCTGGTCCGTGAA 130 333 1110 Antisense
Sequence Source Affymetrix Proprietary Database