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[180928_at]

Description T20F7.4 /REP_DB=WormBase Gene ID /WP=CE26684 /TR=O02165 /GB=AAK18983.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 5.5
(-2.4)
A 		4.1
(-3)
A 		5.7
(-2.3)
A 		17.7
(3)
A 		14
B 7.7
(3)
A 		3.8
(-3)
A 		4.3
(-2.2)
A 		6.2
(0.7)
A 		4
C 6.8
(-2.8)
A 		9
(-2.5)
A 		4.4
(-3)
A 		65
(3)
A 		61
avr 6.7
(-2.5) 		5.6
(-2.8) 		4.8
(-3) 		29.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 11.7
(0.1)
A 		13.1
(0.6)
A 		19.5
(3)
A 		3.2
(-3)
A 		4.7
(-2.4)
A 		7.5
(-1.4)
A 		16
B 4.9
(-2.7)
A 		4.7
(-2.8)
A 		7.4
(-2.2)
A 		3.7
(-3)
A 		31.5
(3)
A 		27.5
(2.1)
A 		28
C 16.9
(-1.4)
A 		7.7
(-3)
A 		22.9
(-0.4)
A 		19
(-1.1)
A 		38.5
(2.2)
A 		43.2
(3)
A 		36
avr 11.2
(-2.1) 		8.5
(-3) 		16.6
(-0.2) 		8.6
(-3) 		24.9
(2.6) 		26.1
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2
(0.9)
A 		0.9
(-3)
A 		1.5
(-0.9)
A 		2.6
(3)
A 		2
B 2.5
(3)
A 		1
(-3)
A 		1
(-3)
A 		1.3
(-1.8)
A 		2
C 2.3
(-2.5)
A 		2.6
(-2.3)
A 		1.5
(-3)
A 		11
(3)
A 		10
avr 2.3
(-1.4) 		1.5
(-2.7) 		1.3
(-3) 		5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.2
(-0.8)
A 		4.6
(3)
A 		4.2
(2.4)
A 		0.8
(-3)
A 		1.4
(-2.1)
A 		1.8
(-1.4)
A 		4
B 1.7
(-2.6)
A 		1.6
(-2.7)
A 		1.8
(-2.6)
A 		1
(-3)
A 		12.8
(3)
A 		10.3
(1.7)
A 		12
C 6.3
(-1.1)
A 		2.4
(-3)
A 		5.8
(-1.3)
A 		3.8
(-2.3)
A 		12.5
(2)
A 		14.5
(3)
A 		12
avr 3.4
(-1.7) 		2.9
(-2.1) 		3.9
(-1.3) 		1.9
(-3) 		8.9
(3) 		8.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180928_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17501
Sequence Type Exemplar sequence
Representative Public ID T20F7.4 NCBI
Target Description T20F7.4 /REP_DB=WormBase Gene ID /WP=CE26684 /TR=O02165 /GB=AAK18983.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078322
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000037345 ENSEMBL cdna:SNAP chromosome:CEL140:X:16845458:16847806:-1 11/11 None
GENEFINDER00000037354 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16845458:16847987:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078322 7/11 Cross Hyb Matching Probes A 
T20F7.5 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16846976-16847806(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18983 Hypothetical protein T20F7.5 [Caenorhabditis elegans] ref|NP_510723.2| T20F7.5 [Caenorhabditis elegans] 0.0
blast AAK18983 Hypothetical protein T20F7.5 [Caenorhabditis elegans] ref|NP_510723.2| T20F7.5 [Caenorhabditis elegans] 1.0E-132
blast T25896 hypothetical protein T20F7.4 - Caenorhabditis elegans 1.0E-115
blast T25896 hypothetical protein T20F7.4 - Caenorhabditis elegans 2.0E-82
blast CAE69905 Hypothetical protein CBG16257 [Caenorhabditis briggsae] 6.0E-39
blast CAE69905 Hypothetical protein CBG16257 [Caenorhabditis briggsae] 7.0E-23
Sequence
Target Sequence 
>C. ELEGANS:180928_AT
gaggttactggtacccaactgacgatgaaatggagctgttggaacgccggcatctggaga
aagaggcacagacaacaacgaacaaaggatccaataacattgattatttatcatcgaaaa
ttgaaagacaactagaaactgtaaagaaagaagataagaaaaatagtaattccgtagaca
gttgtcgcagtgaatcgtctcttccgaatcacaaccagaattcagatgatgacgacgaac
aggacggcatcggtagatctggattctcttcatcttgttccaagtatcaacattctgttg
catcctcgtccgcgggtgataatagccaaacaacaagctcttcatgctctcaaccaccat
cttcaaaacagcggcaacgtccagtgagagacaccacgctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTTACTGGTACCCAACTGACGA 698 395 83 Antisense
AATGGAGCTGTTGGAACGCCGGCAT 444 161 111 Antisense
AGTTGTCGCAGTGAATCGTCTCTTC 168 653 262 Antisense
GTCTCTTCCGAATCACAACCAGAAT 523 469 279 Antisense
GGACGGCATCGGTAGATCTGGATTC 228 525 324 Antisense
ATCTGGATTCTCTTCATCTTGTTCC 49 35 339 Antisense
ATCAACATTCTGTTGCATCCTCGTC 499 27 368 Antisense
TCCTCGTCCGCGGGTGATAATAGCC 480 591 385 Antisense
TCTCAACCACCATCTTCAAAACAGC 606 613 430 Antisense
CAAAACAGCGGCAACGTCCAGTGAG 492 191 446 Antisense
GTCCAGTGAGAGACACCACGCTGAA 331 477 461 Antisense
Sequence Source Affymetrix Proprietary Database