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[180927_at] 7TM chemoreceptor, srx family

Description K07C6.7 /REP_DB=WormBase Gene ID /WP=CE17178 /TR=O44646 /GB=AAB94249.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 03      6grp_cgc > 37      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 13.4
(-2.7)
A 		14.1
(-2.7)
A 		9.5
(-3)
A 		95.9
(3)
A 		86
B 19.5
(3)
A 		11.3
(-1.5)
A 		8.6
(-3)
A 		11.7
(-1.3)
A 		11
C 5.3
(-3)
A 		8
(-2.5)
A 		6
(-2.9)
A 		38.8
(3)
A 		34
avr 12.7
(-2.3) 		11.1
(-2.5) 		8
(-3) 		48.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 18.5
(3)
A 		4.9
(-3)
A 		10.9
(-0.4)
A 		6.5
(-2.3)
A 		7.4
(-1.9)
A 		6.6
(-2.3)
A 		14
B 6.8
(-2.2)
A 		11.4
(-0.4)
A 		8.8
(-1.4)
A 		8.3
(-1.6)
A 		4.7
(-3)
A 		20.4
(3)
A 		16
C 6.9
(-3)
A 		18.7
(-0.7)
A 		7.8
(-2.8)
A 		11.9
(-2)
A 		9.6
(-2.5)
A 		38
(3)
A 		31
avr 10.7
(-1.6) 		11.7
(-1.1) 		9.2
(-2.2) 		8.9
(-2.3) 		7.2
(-3) 		21.7
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.9
(-1.7)
A 		3.1
(-2.7)
A 		2.5
(-3)
A 		14
(3)
A 		12
B 6.2
(3)
A 		2.8
(-1.9)
A 		2
(-3)
A 		2.5
(-2.3)
A 		4
C 1.8
(-3)
A 		2.3
(-2.4)
A 		2.1
(-2.6)
A 		6.5
(3)
A 		5
avr 4.3
(-0.7) 		2.7
(-2.5) 		2.2
(-3) 		7.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.4
(3)
A 		1.8
(-2.3)
A 		2.4
(-0.3)
A 		1.7
(-2.7)
A 		2.2
(-1)
A 		1.6
(-3)
A 		2
B 2.4
(-2.5)
A 		3.8
(-1)
A 		2.1
(-2.8)
A 		2.2
(-2.7)
A 		1.9
(-3)
A 		7.6
(3)
A 		6
C 2.6
(-2.7)
A 		5.7
(-0.9)
A 		2
(-3)
A 		2.4
(-2.8)
A 		3.1
(-2.4)
A 		12.7
(3)
A 		11
avr 2.8
(-2.2) 		3.8
(-1) 		2.2
(-2.9) 		2.1
(-3) 		2.4
(-2.7) 		7.3
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15763
Sequence Type Exemplar sequence
Representative Public ID K07C6.7 NCBI
Target Description K07C6.7 /REP_DB=WormBase Gene ID /WP=CE17178 /TR=O44646 /GB=AAB94249.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071688(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071688 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-64) (srx-64) mRNA, complete cds. 10/11 None
GENEFINDER00000025771 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3929212:3930491:1 10/11 None
K07C6.7 ENSEMBL cdna:known chromosome:CEL140:V:3929336:3930491:1 gene:K07C6.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025764 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3929335-3930491(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-64
Ensembl K07C6.7
Entrez Gene 187095 Entrez gene
SwissProt O44646 EMBL-EBI
WormBase CE36550 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94249 Serpentine receptor, class x protein 64 [Caenorhabditis elegans] ref|NP_504089.2| Serpentine Receptor, class X family member (srx-64) [Caenorhabditis elegans] 1.0E-160
blast AAB94249 Serpentine receptor, class x protein 64 [Caenorhabditis elegans] ref|NP_504089.2| Serpentine Receptor, class X family member (srx-64) [Caenorhabditis elegans] 1.0E-154
blast AAF39928 Serpentine receptor, class x protein 62 [Caenorhabditis elegans] ref|NP_504114.1| Serpentine Receptor, class X family member (srx-62) [Caenorhabditis elegans] 1.0E-118
blast AAF39928 Serpentine receptor, class x protein 62 [Caenorhabditis elegans] ref|NP_504114.1| Serpentine Receptor, class X family member (srx-62) [Caenorhabditis elegans] 1.0E-113
blast CAE57775 Hypothetical protein CBG00797 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504089.2 6 4-26,39-61,81-103,123-145,165-187,247-269
K07C6.7 6 4-26,39-61,81-103,123-145,165-187,247-269
GENEFINDER00000025771 6 10-27,40-62,82-104,124-146,166-188,248-270
Sequence
Target Sequence 
>C. ELEGANS:180927_AT
atttgtacttctgctctgctatgagctctcagtgatgattcatctcgccatttccctgaa
tcgcttctgcgcagtgtgggctccatacaagtatcaaaatattttcatttcctgccattt
ttattacgatgagaaaatacatttcttaacgttcacaaattccgaattctgtggatacat
tggctggtatggagatttcttgaaaaacgctgtcatcgtggcaatcgttgtctcaattga
tattcttacagttgtcaaagtcaaacaaatgtctaagaagattagctcaagcatttctga
tcaggcacacagtaatctaactagtcgggaaatcagatttctgaaacagactgttacgca
aggctctgttttcatgttggagcttctgacatattttttcgttccccgatattttgcaaa
cagatggattgtattctttgccacttcctttgcctgggttgcagtacacgccgttgatgg
aatggtagtgattctcttcaatcctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGTACTTCTGCTCTGCTATGAG 107 19 252 Antisense
AGTGATGATTCATCTCGCCATTTCC 570 59 282 Antisense
TGAATCGCTTCTGCGCAGTGTGGGC 222 575 308 Antisense
AATATTTTCATTTCCTGCCATTTTT 133 175 349 Antisense
GCTGTCATCGTGGCAATCGTTGTCT 553 295 460 Antisense
AGCTCAAGCATTTCTGATCAGGCAC 563 79 535 Antisense
TCTGACATATTTTTTCGTTCCCCGA 121 609 636 Antisense
TGGATTGTATTCTTTGCCACTTCCT 141 551 676 Antisense
CTTCCTTTGCCTGGGTTGCAGTACA 428 219 695 Antisense
GGTTGCAGTACACGCCGTTGATGGA 666 507 708 Antisense
GGTAGTGATTCTCTTCAATCCTGAA 153 505 735 Antisense
Sequence Source Affymetrix Proprietary Database