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[180926_at] 7TM chemoreceptor, srw family

Description K04F1.2 /REP_DB=WormBase Gene ID /WP=CE19953 /TR=Q9TXK9 /GB=AAC78162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 28      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 35
(1.9)
A 		8.5
(-2.1)
A 		2.2
(-3)
A 		42.6
(3)
A 		40
B 33.1
(-1)
A 		63.9
(3)
A 		17.9
(-3)
A 		42.7
(0.2)
A 		46
C 19.1
(0.3)
A 		8.3
(-3)
A 		23
(1.5)
A 		28
(3)
A 		20
avr 29.1
(0.8) 		26.9
(0.2) 		14.4
(-3) 		37.8
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 6.9
(-2.1)
A 		4.8
(-2.4)
A 		26.5
(1.4)
A 		8.9
(-1.7)
A 		35.7
(3)
A 		1.6
(-3)
A 		34
B 33.8
(2.4)
A 		12.6
(-1.5)
A 		36.9
(3)
A 		25.3
(0.8)
A 		5.6
(-2.8)
A 		4.6
(-3)
A 		32
C 17.9
(-3)
A 		45.6
(3)
A 		22.1
(-2.1)
A 		32.6
(0.2)
A 		30.8
(-0.2)
A 		32.1
(0.1)
A 		28
avr 19.5
(-0.4) 		21
(0.1) 		28.5
(3) 		22.3
(0.6) 		24
(1.3) 		12.8
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.7
(3)
A 		1.9
(-2.4)
A 		0.6
(-3)
A 		6.2
(-0.2)
A 		12
B 10.5
(0.3)
A 		15.8
(3)
A 		4.1
(-3)
A 		9.1
(-0.4)
A 		12
C 6.3
(1.2)
A 		2.4
(-3)
A 		8
(3)
A 		4.7
(-0.5)
A 		6
avr 9.8
(3) 		6.7
(-0.3) 		4.2
(-3) 		6.7
(-0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.3
(-2.5)
A 		1.7
(-2.3)
A 		5.8
(0.1)
A 		2.3
(-1.9)
A 		10.8
(3)
A 		0.4
(-3)
A 		10
B 11.8
(3)
A 		4.2
(-1.5)
A 		9
(1.3)
A 		6.7
(-0)
A 		2.3
(-2.6)
A 		1.7
(-3)
A 		10
C 6.6
(-2.3)
A 		13.9
(3)
A 		5.6
(-3)
A 		6.6
(-2.3)
A 		10
(0.2)
A 		10.7
(0.7)
A 		8
avr 6.6
(1.1) 		6.6
(1.1) 		6.8
(1.4) 		5.2
(-1.4) 		7.7
(3) 		4.3
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15416
Sequence Type Exemplar sequence
Representative Public ID K04F1.2 NCBI
Target Description K04F1.2 /REP_DB=WormBase Gene ID /WP=CE19953 /TR=Q9TXK9 /GB=AAC78162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071077(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071077 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-96) (srw-96) mRNA, complete cds. 11/11 None
GENEFINDER00000011976 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1673374:1676826:-1 10/11 None
K04F1.2 ENSEMBL cdna:known chromosome:CEL140:V:1673374:1675442:-1 gene:K04F1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011966 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1673373-1675387(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-96
Ensembl K04F1.2
Entrez Gene 186989 Entrez gene
SwissProt Q9TXK9 EMBL-EBI
WormBase CE34916 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78162 Serpentine receptor, class w protein 96 [Caenorhabditis elegans] ref|NP_503478.2| Serpentine Receptor, class W family member (srw-96) [Caenorhabditis elegans] 0.0
blast AAC78162 Serpentine receptor, class w protein 96 [Caenorhabditis elegans] ref|NP_503478.2| Serpentine Receptor, class W family member (srw-96) [Caenorhabditis elegans] 6.0E-88
blast AAC78163 Serpentine receptor, class w protein 98 [Caenorhabditis elegans] ref|NP_503479.2| Serpentine Receptor, class W family member (srw-98) [Caenorhabditis elegans] 2.0E-69
blast AAB37921 Serpentine receptor, class w protein 97 [Caenorhabditis elegans] ref|NP_494034.1| Serpentine Receptor, class W family member (srw-97) [Caenorhabditis elegans] 6.0E-62
blast AAC78163 Serpentine receptor, class w protein 98 [Caenorhabditis elegans] ref|NP_503479.2| Serpentine Receptor, class W family member (srw-98) [Caenorhabditis elegans] 9.0E-36
blast CAE62422 Hypothetical protein CBG06512 [Caenorhabditis briggsae] 3.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503478.2 7 41-63,70-92,132-149,170-192,253-275,300-322,337-359
K04F1.2 7 41-63,70-92,132-149,170-192,253-275,300-322,337-359
GENEFINDER00000011976 5 99-121,128-150,201-223,248-270,285-307
Sequence
Target Sequence 
>C. ELEGANS:180926_AT
ggtacatgggagccgaggccacagtgagcaaaaaagaaaataaaatgtatcgacttaatt
ttcaaattttcagttgtaaaggaacacctttgaattcgacgtttcctgtgttcgatcaaa
gattatcctctttgtttacagtttacgatggagttttgggaaaagcttacatgttggcca
gcgggacggttactaaaataattccatgcgtcatgttgccggttctcacaattcttctaa
ttctcgagctaaggaaagcagaaaagaaaagaagtgaacaaaactttgcaaagagatcgt
caacggagagaaccacaggtttggtgctttttatggcaatttccttcacagtccttgaac
tcccgatgggattcgtttatcttgttcaagtcaagcatactgatctgggtttcatctggt
ggggaacatttgtgtaccacatctgcaatgcaattctcactgtgaacattataagtcact
gtattatatgctacataatgtcaggtcaatataaagcgactgtacggagaattttgaaaa
ttaagacgtcaattacccatgagcagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTACATGGGAGCCGAGGCCACAGT 684 503 587 Antisense
GACGTTTCCTGTGTTCGATCAAAGA 39 379 684 Antisense
AGATTATCCTCTTTGTTTACAGTTT 190 65 706 Antisense
TACATGTTGGCCAGCGGGACGGTTA 405 321 754 Antisense
AATTCCATGCGTCATGTTGCCGGTT 655 177 786 Antisense
GGTTCTCACAATTCTTCTAATTCTC 360 507 807 Antisense
TTATGGCAATTTCCTTCACAGTCCT 46 681 917 Antisense
ACTCCCGATGGGATTCGTTTATCTT 75 99 945 Antisense
ACTGATCTGGGTTTCATCTGGTGGG 574 95 985 Antisense
ATCTGCAATGCAATTCTCACTGTGA 34 35 1027 Antisense
GACGTCAATTACCCATGAGCAGCAT 330 377 1131 Antisense
Sequence Source Affymetrix Proprietary Database