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[180924_at]

Description F07C4.6 /REP_DB=WormBase Gene ID /WP=CE09205 /TR=P91208 /GB=AAG24035.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 72      6grp_total > 71      4grp_total > 48      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 87.9
(-3)
A 		143.1
(-0.7)
A 		230.7
(3)
P 		131.6
(-1.2)
P 		143
B 107.1
(-2)
A 		143.8
(-0.2)
A 		212.8
(3)
P 		85.1
(-3)
P 		128
C 75.6
(-3)
A 		201.1
(2.6)
P 		209.7
(3)
P 		115.3
(-1.2)
A 		134
avr 90.2
(-3) 		162.7
(0.4) 		217.7
(3) 		110.7
(-2) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 921
1 2 3 4 5 6 range
A 148.1
(-3)
P 		320.6
(-1.8)
P 		605.8
(0.2)
P 		1006
(3)
P 		523.9
(-0.4)
P 		227.6
(-2.4)
P 		858
B 84.9
(-3)
P 		240.1
(-1.6)
P 		742.8
(3)
P 		741.8
(3)
P 		471.8
(0.5)
P 		219.7
(-1.8)
P 		658
C 114.4
(-3)
A 		207.1
(-2.3)
P 		730.6
(1.4)
P 		948.7
(3)
P 		588.3
(0.4)
P 		251.6
(-2)
P 		834
avr 115.8
(-3) 		255.9
(-1.9) 		693.1
(1.4) 		898.8
(3) 		528
(0.2) 		233
(-2.1) 		783
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 32
(-1.1)
A 		31.1
(-1.3)
A 		60.3
(3)
P 		19.3
(-3)
P 		41
B 34.2
(0.1)
A 		35.5
(0.3)
A 		49.3
(3)
P 		18.1
(-3)
P 		31
C 25
(-2.4)
A 		57.8
(1.3)
P 		73.1
(3)
P 		19.4
(-3)
A 		54
avr 30.4
(-1.4) 		41.5
(0.2) 		60.9
(3) 		18.9
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 27.3
(-3)
P 		114
(-0.7)
P 		131.9
(-0.2)
P 		255.1
(3)
P 		158.1
(0.4)
P 		55.4
(-2.3)
P 		228
B 29.6
(-3)
P 		79.9
(-1.2)
P 		180.4
(2.4)
P 		196.5
(3)
P 		191.7
(2.8)
P 		81.9
(-1.1)
P 		167
C 42.4
(-3)
A 		63.2
(-2.2)
P 		185.9
(2.8)
P 		190.8
(3)
P 		190.4
(3)
P 		84.2
(-1.3)
P 		148
avr 33.1
(-3) 		85.7
(-1.3) 		166.1
(1.4) 		214.1
(3) 		180.1
(1.9) 		73.8
(-1.7) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180924_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11882
Sequence Type Exemplar sequence
Representative Public ID F07C4.6 NCBI
Target Description F07C4.6 /REP_DB=WormBase Gene ID /WP=CE09205 /TR=P91208 /GB=AAG24035.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072570 NCBI Caenorhabditis elegans F07C4.6 (F07C4.6) mRNA, complete cds. 11/11 None
SNAP00000003387 ENSEMBL cdna:SNAP chromosome:CEL140:V:7629442:7630312:1 11/11 None
GENEFINDER00000003410 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7629442:7630524:1 11/11 None
F07C4.6 ENSEMBL cdna:known chromosome:CEL140:V:7629442:7630312:1 gene:F07C4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7629442-7630313(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07C4.6
Entrez Gene 184131 Entrez gene
SwissProt P91208 EMBL-EBI
WormBase CE09205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504971 F07C4.6 [Caenorhabditis elegans] gb|AAG24035.1| Hypothetical protein F07C4.6 [Caenorhabditis elegans] 1.0E-105
blast NP_504971 F07C4.6 [Caenorhabditis elegans] gb|AAG24035.1| Hypothetical protein F07C4.6 [Caenorhabditis elegans] 2.0E-79
blast CAE65464 Hypothetical protein CBG10429 [Caenorhabditis briggsae] 3.0E-79
blast CAB04292 Hypothetical protein F35E8.9 [Caenorhabditis elegans] ref|NP_506984.1| F35E8.9 [Caenorhabditis elegans] 4.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 0.76
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.4E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.2E-13
Sequence
Target Sequence 
>C. ELEGANS:180924_AT
catcttcgcttgcccagattcaaggagagttgaattgcactgcgtacaatggaacatcgt
ttgtctactccgcatcagcggttgcatgctcaaacgtgctgtcggaccaatactgccaag
tcgcttacccttctgccaattcatggctaggttaccctgaagaaggaagttctttccaaa
ggccattactttgtttcaccactggtacgacatcctcatcccctactagtaaagatgcaa
aaactgccgcaattgctcattgtccaaaaacttgcggattgtgctgtcaaacgagtactt
acagctgccagaatgctccatttcctcgtctcaactgcgcttctgtcaccaaagcaatgt
gcctctcaatcacgtggcgtcaaatccttgccgaagattgcccaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTTCGCTTGCCCAGATTCAAGG 444 213 53 Antisense
GTCTACTCCGCATCAGCGGTTGCAT 163 469 115 Antisense
TGCTCAAACGTGCTGTCGGACCAAT 710 573 139 Antisense
GACCAATACTGCCAAGTCGCTTACC 592 381 157 Antisense
GTTTCACCACTGGTACGACATCCTC 583 449 245 Antisense
ATCCTCATCCCCTACTAGTAAAGAT 620 39 264 Antisense
AAACTGCCGCAATTGCTCATTGTCC 431 127 293 Antisense
ACTGCGCTTCTGTCACCAAAGCAAT 619 97 386 Antisense
GCAATGTGCCTCTCAATCACGTGGC 630 321 406 Antisense
TCACGTGGCGTCAAATCCTTGCCGA 230 625 422 Antisense
ATCCTTGCCGAAGATTGCCCAAATT 261 39 436 Antisense
Sequence Source Affymetrix Proprietary Database