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[180923_at]

Description F44D12.8 /REP_DB=WormBase Gene ID /WP=CE03331 /TR=Q20395 /GB=CAA92604.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.1
(-3)
A 		8.2
(-1.8)
A 		8.1
(-1.9)
A 		25.2
(3)
A 		21
B 6.3
(-3)
A 		6.8
(-2.7)
A 		7.1
(-2.5)
A 		15.7
(3)
A 		9
C 2.8
(-3)
A 		7.1
(3)
A 		2.8
(-3)
A 		3.3
(-2.3)
A 		4
avr 4.4
(-3) 		7.4
(-1.3) 		6
(-2.1) 		14.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 51.1
(3)
A 		4.9
(-3)
A 		14.3
(-1.8)
A 		8.1
(-2.6)
A 		6.5
(-2.8)
A 		39.2
(1.5)
A 		46
B 6.6
(-2.5)
A 		2.9
(-3)
A 		4.6
(-2.8)
A 		4.6
(-2.8)
A 		10.4
(-2)
A 		46.3
(3)
A 		43
C 9.3
(-1.3)
A 		5.4
(-3)
A 		7.5
(-2.1)
A 		9.9
(-1.1)
A 		13.5
(0.5)
A 		19.3
(3)
A 		14
avr 22.3
(0.5) 		4.4
(-3) 		8.8
(-2.1) 		7.5
(-2.4) 		10.1
(-1.9) 		34.9
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.5
(-3)
A 		1.8
(-2.2)
A 		2.1
(-1.4)
A 		3.7
(3)
A 		2
B 2
(-1.6)
A 		1.7
(-2.6)
A 		1.6
(-3)
A 		3.3
(3)
A 		2
C 0.9
(-1.7)
A 		2
(3)
A 		1
(-1.3)
A 		0.6
(-3)
A 		1
avr 1.5
(-3) 		1.8
(-1.2) 		1.6
(-2.4) 		2.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.4
(2.8)
A 		1.7
(-3)
A 		3.1
(-1.9)
A 		2.1
(-2.7)
A 		2
(-2.8)
A 		9.6
(3)
A 		8
B 2.3
(-2.5)
A 		1
(-3)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		4.2
(-1.8)
A 		17.2
(3)
A 		16
C 3.4
(-0.8)
A 		1.6
(-3)
A 		1.9
(-2.6)
A 		2
(-2.5)
A 		4.4
(0.4)
A 		6.5
(3)
A 		5
avr 5
(-0.8) 		1.4
(-3) 		2
(-2.6) 		1.8
(-2.8) 		3.5
(-1.7) 		11.1
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9994
Sequence Type Exemplar sequence
Representative Public ID F44D12.8 NCBI
Target Description F44D12.8 /REP_DB=WormBase Gene ID /WP=CE03331 /TR=Q20395 /GB=CAA92604.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069408 NCBI Caenorhabditis elegans F44D12.8 (F44D12.8) mRNA, complete cds. 11/11 None
SNAP00000020513 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10023343:10025198:1 11/11 None
GENEFINDER00000020521 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10023309:10025198:1 11/11 None
F44D12.8 ENSEMBL cdna:known chromosome:CEL140:IV:10023309:10025198:1 gene:F44D12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10023314-10025204(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44D12.8
Entrez Gene 177864 Entrez gene
SwissProt Q20395 EMBL-EBI
WormBase CE03331 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92604 Hypothetical protein F44D12.8 [Caenorhabditis elegans] ref|NP_501809.1| F44D12.8 [Caenorhabditis elegans] 0.0
blast CAB03093 Hypothetical protein F42G4.2 [Caenorhabditis elegans] ref|NP_496775.2| F42G4.2 [Caenorhabditis elegans] 1.0E-102
blast NP_491796 T08B2.11 [Caenorhabditis elegans] gb|AAG00018.1| Hypothetical protein T08B2.11 [Caenorhabditis elegans] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:180923_AT
ttgggttgttccagaacgagcccctggcgattgtgaaaagaatgatgaaggagttccaat
cactaatccagaattggttgctgctcttgcagaagataacattgaaatcgatgagaagag
ctggttcgatcatatcggagactacatgtcgtgtgcaatgccacgaggtgttacactgcc
agaaaaccatacgtttgactctcttgctccacgtgataagttggaggcaaatagtgattt
cgtgagtcaggagactgttgcgtacaacactgttaagaatttggtggaattgagtgaaga
cgcaatcaaacgtttttcaatgaaacgtgatgggattgatgacagagcacggcctacagt
aacccaggatacaacagttgagactacgattgagacaacaatgccactccctcctgttaa
agcactgtcaactgatacgatttcaacaacacctggaaaagcgatttccttccatatgaa
gaacgttgtctgcttgagttatgaccgtaatcatcctattcaatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGGTTGTTCCAGAACGAGCCCCT 512 233 747 Antisense
GAGCCCCTGGCGATTGTGAAAAGAA 578 383 764 Antisense
ATCCAGAATTGGTTGCTGCTCTTGC 176 41 812 Antisense
ATGCCACGAGGTGTTACACTGCCAG 171 39 904 Antisense
AAAACCATACGTTTGACTCTCTTGC 282 131 929 Antisense
CTCTCTTGCTCCACGTGATAAGTTG 428 231 945 Antisense
TGACAGAGCACGGCCTACAGTAACC 493 571 1086 Antisense
GATTGAGACAACAATGCCACTCCCT 198 435 1134 Antisense
TCCCTCCTGTTAAAGCACTGTCAAC 35 599 1154 Antisense
GAAAAGCGATTTCCTTCCATATGAA 247 355 1202 Antisense
GACCGTAATCATCCTATTCAATCAA 285 383 1249 Antisense
Sequence Source Affymetrix Proprietary Database