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[180922_at]

Description C52B9.2 /REP_DB=WormBase Gene ID /WP=CE04253 /TR=Q22941 /GB=AAK39212.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      6grp_total > 60      4grp_total > 44      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 150.9
(-3)
A 		283
(3)
P 		177.5
(-1.8)
A 		157.2
(-2.7)
A 		132
B 172.5
(3)
A 		146.7
(1.5)
A 		166.5
(2.6)
A 		71
(-3)
P 		102
C 199.4
(3)
P 		179.6
(1.7)
A 		105
(-3)
A 		123
(-1.9)
A 		94
avr 174.3
(1) 		203.1
(3) 		149.7
(-0.7) 		117.1
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 191.3
(0.3)
P 		166.2
(-1.2)
M 		136
(-3)
M 		235.7
(3)
P 		180.6
(-0.3)
A 		166.7
(-1.2)
P 		100
B 160.1
(-1.1)
M 		146.1
(-2.6)
P 		196.3
(2.6)
P 		199.9
(3)
A 		163.8
(-0.7)
P 		141.9
(-3)
P 		58
C 174.5
(-1.6)
P 		148.3
(-3)
M 		260
(3)
M 		208.7
(0.2)
A 		148.9
(-3)
P 		178.5
(-1.4)
P 		112
avr 175.3
(-0.9) 		153.5
(-3) 		197.4
(1.3) 		214.8
(3) 		164.4
(-1.9) 		162.4
(-2.1) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 55
(2)
A 		61.4
(3)
P 		46.4
(0.7)
A 		23
(-3)
A 		38
B 55
(3)
A 		36.2
(0.2)
A 		38.6
(0.5)
A 		15.1
(-3)
P 		40
C 66
(3)
P 		51.6
(1.1)
A 		36.6
(-0.9)
A 		20.7
(-3)
A 		45
avr 58.7
(3) 		49.7
(1.6) 		40.5
(0.2) 		19.6
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 35.3
(-1.9)
P 		59.1
(2.9)
M 		29.6
(-3)
M 		59.8
(3)
P 		54.5
(1.9)
A 		40.6
(-0.8)
P 		30
B 55.7
(-0.4)
M 		48.6
(-2.7)
P 		47.7
(-3)
P 		52.9
(-1.3)
A 		66.5
(3)
P 		52.9
(-1.3)
P 		19
C 64.7
(2.6)
P 		45.2
(-2.2)
M 		66.2
(3)
M 		42
(-3)
A 		48.2
(-1.5)
P 		59.8
(1.4)
P 		24
avr 51.9
(-0.1) 		51
(-0.8) 		47.8
(-3) 		51.6
(-0.3) 		56.4
(3) 		51.1
(-0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180922_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16864
Sequence Type Exemplar sequence
Representative Public ID C52B9.2 NCBI
Target Description C52B9.2 /REP_DB=WormBase Gene ID /WP=CE04253 /TR=Q22941 /GB=AAK39212.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029312 NCBI Caenorhabditis elegans C52B9.2b (C52B9.2) mRNA, complete cds. 11/11 None
SNAP00000014555 ENSEMBL cdna:SNAP chromosome:CEL140:X:4282619:4283830:1 10/11 None
C52B9.2b ENSEMBL cdna:known chromosome:CEL140:X:4281050:4283830:1 gene:C52B9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029311 2/11 Cross Hyb Matching Probes None
SNAP00000014554 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014563 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014567 8/11 Cross Hyb Matching Probes None
C52B9.2a 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180702 2 1 NM_001029312 180922_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4281050-4283831(+) 100.0 100.0
Public Domain and Genome References
Ensembl C52B9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024483 C52B9.2b [Caenorhabditis elegans] gb|AAQ82848.1| Hypothetical protein C52B9.2b [Caenorhabditis elegans] pir||T28934 hypothetical protein C52B9.2 - Caenorhabditis elegans 0.0
blast NP_001024483 C52B9.2b [Caenorhabditis elegans] gb|AAQ82848.1| Hypothetical protein C52B9.2b [Caenorhabditis elegans] pir||T28934 hypothetical protein C52B9.2 - Caenorhabditis elegans 1.0E-104
blast NP_001024482 C52B9.2a [Caenorhabditis elegans] gb|AAK39212.2| Hypothetical protein C52B9.2a [Caenorhabditis elegans] 2.0E-97
blast CAE68553 Hypothetical protein CBG14386 [Caenorhabditis briggsae] 1.0E-73
blast CAE68553 Hypothetical protein CBG14386 [Caenorhabditis briggsae] 5.0E-36
blast NP_001024482 C52B9.2a [Caenorhabditis elegans] gb|AAK39212.2| Hypothetical protein C52B9.2a [Caenorhabditis elegans] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR000418 EMBL-EBI Ets-domain 3.2E-14
Pfam IPR000418 EMBL-EBI Ets-domain 5.7E-15
Pfam IPR000418 EMBL-EBI Ets-domain 5.7E-15
Sequence
Target Sequence 
>C. ELEGANS:180922_AT
caagatttgcagccgacatcgggcaaaaatatagtgacaatagtgatttgaacaatgaaa
attacagctgctcgccaaaaacaccagagaactcaatggagcaagtttggtcaagatgtg
caaacttcgagttgataccatctcctgaggctctaccaagttacttcttgctgcacaatt
ttggagaagctgaagatcctgaaaatgatttattgaccgatcaggaacttttaaaactga
atggaccaaaccgattaattgcatttcttgccgatcttgcgatgaatgagaaagctggcc
gagctctacactggactggaaatggcttggagtttgttattgtgaataccaagctggttt
caaaattatggggaaatcgaaagcgtaatacaaaagatatgaattattcgaagctgtcga
gagccatgagggacaagtacaagagtgcaacaagcggagggcaattggagaaaaggccag
gacttcacacctacgccttcactatacaagctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGATTTGCAGCCGACATCGGGCA 100 185 593 Antisense
TTACAGCTGCTCGCCAAAAACACCA 366 681 654 Antisense
ACTTCGAGTTGATACCATCTCCTGA 600 103 716 Antisense
ATCTCCTGAGGCTCTACCAAGTTAC 539 29 732 Antisense
ACCAAGTTACTTCTTGCTGCACAAT 206 85 747 Antisense
TTGCATTTCTTGCCGATCTTGCGAT 672 701 851 Antisense
TGAGAAAGCTGGCCGAGCTCTACAC 412 567 879 Antisense
CCGAGCTCTACACTGGACTGGAAAT 100 265 891 Antisense
GAAGCTGTCGAGAGCCATGAGGGAC 474 343 1002 Antisense
GAAAAGGCCAGGACTTCACACCTAC 664 353 1062 Antisense
CCTACGCCTTCACTATACAAGCTTA 338 269 1082 Antisense
Sequence Source Affymetrix Proprietary Database