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[180921_at]

Description Y48A6B.5 /REP_DB=WormBase Gene ID /WP=CE19188 /TR=Q9XXD2 /GB=CAA19529.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 87      4grp_highest_8_8 > 07      4grp_high_8_8 > 20      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 19      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 374.9
(-2.5)
P 		433.9
(-1.1)
P 		356.4
(-3)
P 		595
(3)
P 		239
B 320
(-2)
P 		385.9
(0.5)
P 		294
(-3)
P 		451.6
(3)
P 		158
C 388.9
(0.6)
P 		364.8
(-0.4)
P 		295.9
(-3)
P 		452.8
(3)
P 		157
avr 361.3
(-1.5) 		394.9
(-0.4) 		315.4
(-3) 		499.8
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 242.1
(-2.4)
P 		218.3
(-3)
P 		302.9
(-0.8)
P 		303.6
(-0.7)
P 		290.1
(-1.1)
P 		444.1
(3)
P 		226
B 237.6
(-1.2)
P 		191.4
(-2.2)
P 		159.1
(-3)
P 		242.6
(-1.1)
P 		329.6
(1)
P 		417.1
(3)
P 		258
C 294
(-1.8)
P 		289.9
(-2)
P 		265.1
(-3)
P 		289.8
(-2)
P 		345.7
(0.3)
P 		410.9
(3)
P 		146
avr 257.9
(-2.2) 		233.2
(-3) 		242.4
(-2.7) 		278.7
(-1.6) 		321.8
(-0.2) 		424
(3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 136.5
(3)
P 		94.2
(-2.1)
P 		93.2
(-2.3)
P 		87.1
(-3)
P 		49
B 102
(3)
P 		95.3
(1.8)
P 		68.1
(-3)
P 		96.2
(2)
P 		34
C 128.7
(3)
P 		104.9
(0.3)
P 		103.1
(0.1)
P 		76.3
(-3)
P 		52
avr 122.4
(3) 		98.1
(-1.1) 		88.1
(-2.7) 		86.5
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 44.6
(-3)
P 		77.6
(0.1)
P 		66
(-1)
P 		77
(0.1)
P 		87.5
(1.1)
P 		108.1
(3)
P 		64
B 82.7
(-0.7)
P 		63.7
(-1.7)
P 		38.6
(-3)
P 		64.3
(-1.7)
P 		133.9
(1.9)
P 		155.5
(3)
P 		117
C 109
(0.8)
P 		88.5
(-0.7)
P 		67.5
(-2.3)
P 		58.3
(-3)
P 		111.9
(1.1)
P 		137.6
(3)
P 		79
avr 78.8
(-1.3) 		76.6
(-1.5) 		57.4
(-3) 		66.5
(-2.3) 		111.1
(1.2) 		133.7
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180921_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7539
Sequence Type Exemplar sequence
Representative Public ID Y48A6B.5 NCBI
Target Description Y48A6B.5 /REP_DB=WormBase Gene ID /WP=CE19188 /TR=Q9XXD2 /GB=CAA19529.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067015 NCBI Caenorhabditis elegans Y48A6B.5 (Y48A6B.5) mRNA, complete cds. 11/11 None
SNAP00000033006 ENSEMBL cdna:SNAP chromosome:CEL140:III:11008928:11012508:1 10/11 None
Y48A6B.5 ENSEMBL cdna:known chromosome:CEL140:III:11008920:11010472:1 gene:Y48A6B.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033024 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11008923-11010315(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48A6B.5
Entrez Gene 176532 Entrez gene
SwissProt Q9XXD2 EMBL-EBI
WormBase CE19188 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19529 Hypothetical protein Y48A6B.5 [Caenorhabditis elegans] ref|NP_499416.1| Y48A6B.5 [Caenorhabditis elegans] 1.0E-102
blast CAE71330 Hypothetical protein CBG18230 [Caenorhabditis briggsae] 3.0E-93
blast CAA19529 Hypothetical protein Y48A6B.5 [Caenorhabditis elegans] ref|NP_499416.1| Y48A6B.5 [Caenorhabditis elegans] 2.0E-86
blast CAE71330 Hypothetical protein CBG18230 [Caenorhabditis briggsae] 2.0E-79
blast XP_687222 PREDICTED: similar to 3-5 exoribonuclease CSL4 homolog (Exosome component 1) [Danio rerio] 6.0E-18
blast XP_687222 PREDICTED: similar to 3-5 exoribonuclease CSL4 homolog (Exosome component 1) [Danio rerio] 7.0E-16
Sequence
Target Sequence 
>C. ELEGANS:180921_AT
tgctcgccgaaacgcttgtggcgcccggcgacaaggttctcgacgcgattggtgaatatc
gaatggggaagggattatacgaggcgaatcgaaggatcttcgcgtcggtagccggttttg
tcaacgtttatggattcagagataaatccgacaacctggtgcaagtgatcgaagttcgcc
gcagcgaagatcagctcgacaatgagcttctcccattccacggagccatcgtcaccgcca
aagtgatggctgtcggattacgattcgccaaatgtgacatcatcagtatcggcgataagg
tttacaagaagcggttctcggcgctgctgccgaaaaagaagctgaggccgctggaacctg
aattgagtgagccattcaaaaactttgtgcgacccaacgactacattctggcaaaagttt
gtgaagacgccgaaatcaaggacaaattcgttttatcgatcgccgaagacgagctaggcg
ttgtgctgtgccgtggacgatttggtgaaccaatgcaaaaagtcgactggaatacggtgg
tctcgacacgaaccggcaaaacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCGCCGAAACGCTTGTGGCGCC 33 581 14 Antisense
GCGACAAGGTTCTCGACGCGATTGG 81 289 41 Antisense
TCGAAGGATCTTCGCGTCGGTAGCC 205 601 102 Antisense
GTAGCCGGTTTTGTCAACGTTTATG 466 453 121 Antisense
GCAAGTGATCGAAGTTCGCCGCAGC 678 319 174 Antisense
GCCGCAGCGAAGATCAGCTCGACAA 200 285 191 Antisense
GATGGCTGTCGGATTACGATTCGCC 250 405 258 Antisense
TACAAGAAGCGGTTCTCGGCGCTGC 198 643 316 Antisense
CGACCCAACGACTACATTCTGGCAA 29 251 403 Antisense
TGTGCTGTGCCGTGGACGATTTGGT 265 555 495 Antisense
GTCTCGACACGAACCGGCAAAACGG 161 471 553 Antisense
Sequence Source Affymetrix Proprietary Database