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[180920_s_at]

Description ZK1037.6 /REP_DB=WormBase Gene ID /WP=CE16758 /TR=O45988 /GB=CAB03505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 50      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 73.5
(-2.3)
A 		119.5
(3)
A 		100.6
(0.8)
A 		67.3
(-3)
A 		52
B 36.7
(-1.8)
A 		148.2
(3)
A 		130.7
(2.2)
A 		8.7
(-3)
A 		140
C 69.1
(0.4)
P 		111.5
(3)
P 		106.7
(2.7)
P 		12.5
(-3)
A 		99
avr 59.8
(-1.1) 		126.4
(3) 		112.7
(2.2) 		29.5
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 212.4
(3)
P 		89.1
(-0.8)
A 		52.1
(-2)
A 		20.2
(-3)
A 		98.8
(-0.5)
P 		156.6
(1.3)
P 		192
B 182.1
(3)
P 		65
(-2.3)
P 		88.4
(-1.2)
P 		49.1
(-3)
A 		165.4
(2.2)
P 		138.8
(1)
P 		133
C 194.8
(3)
P 		64.3
(-2.3)
P 		46.4
(-3)
A 		57.1
(-2.6)
A 		119.6
(-0)
P 		180.6
(2.4)
P 		148
avr 196.4
(3) 		72.8
(-1.8) 		62.3
(-2.2) 		42.1
(-3) 		127.9
(0.3) 		158.7
(1.5) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 26.8
(3)
A 		25.9
(2.7)
A 		26.3
(2.8)
A 		9.9
(-3)
A 		17
B 11.7
(-1.3)
A 		36.6
(3)
A 		30.3
(1.9)
A 		1.8
(-3)
A 		35
C 22.9
(0.6)
P 		32
(2.1)
P 		37.2
(3)
P 		2.1
(-3)
A 		35
avr 20.5
(0.5) 		31.5
(3) 		31.3
(3) 		4.6
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 39.2
(3)
P 		31.7
(1.7)
A 		11.3
(-1.9)
A 		5.1
(-3)
A 		29.8
(1.3)
P 		38.1
(2.8)
P 		34
B 63.3
(2.6)
P 		21.7
(-2)
P 		21.5
(-2.1)
P 		13
(-3)
A 		67.2
(3)
P 		51.8
(1.3)
P 		54
C 72.2
(3)
P 		19.6
(-2.2)
P 		11.8
(-3)
A 		11.5
(-3)
A 		38.7
(-0.3)
P 		60.5
(1.8)
P 		61
avr 58.2
(3) 		24.3
(-1.2) 		14.9
(-2.4) 		9.9
(-3) 		45.2
(1.4) 		50.1
(2) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180920_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13151
Sequence Type Exemplar sequence
Representative Public ID ZK1037.6 NCBI
Target Description ZK1037.6 /REP_DB=WormBase Gene ID /WP=CE16758 /TR=O45988 /GB=CAB03505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074398 NCBI Caenorhabditis elegans ZK1037.6 (ZK1037.6) mRNA, complete cds. 11/11 None
SNAP00000019040 ENSEMBL cdna:SNAP chromosome:CEL140:V:15328418:15330288:-1 11/11 None
GENEFINDER00000019050 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15327985:15330288:-1 10/11 None
ZK1037.6 ENSEMBL cdna:known chromosome:CEL140:V:15328418:15330381:-1 gene:ZK1037.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15328417-15330288(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1037.6
Entrez Gene 180034 Entrez gene
SwissProt O45988 EMBL-EBI
WormBase CE16758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03505 Hypothetical protein ZK1037.6 [Caenorhabditis elegans] ref|NP_506799.1| ZK1037.6 [Caenorhabditis elegans] 0.0
blast CAB02803 Hypothetical protein C29F3.7 [Caenorhabditis elegans] ref|NP_741643.2| C29F3.7 [Caenorhabditis elegans] 4.0E-87
blast CAB04684 Hypothetical protein T05E12.6 [Caenorhabditis elegans] ref|NP_507327.2| T05E12.6 [Caenorhabditis elegans] 2.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.7E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506799.1 1 471-490
ZK1037.6 1 471-490
SNAP00000019040 1 471-490
Sequence
Target Sequence 
>C. ELEGANS:180920_S_AT
gaatccctacattttgacaggtctcaacagttccgggagaattgacatttacaatggagg
attcacaaagcataaggctaatgttctgggaacttatttagccggaatcggcgcttcaag
cttcccacaacaactcttcggcgagcttaccacattcgtaatgtcgactcccggattcgc
tcagttcagctttacccggaaaaactcaacgttccaatcatccagcttccttggcagaag
aggttttatttcagcaaatgcgtatggagtttccaccacgcagcaatctatcaacactta
tataaatgctccaaacaatacgcaatctgccaattttaaagtcaccgtagtttcagctga
tttggttgaaaattcgactttgaaaatgtggggaatgaaggatgggaaatcaatttacag
tttaatattctctagctcaaaccttccaaccctaaatctcgtttcggaaatttacggcga
tgctgtacacattgaattcagcacccatgactcatactcggaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCCTACATTTTGACAGGTCTC 459 329 870 Antisense
TGACAGGTCTCAACAGTTCCGGGAG 600 571 884 Antisense
ACATTCGTAATGTCGACTCCCGGAT 128 103 1021 Antisense
AAAACTCAACGTTCCAATCATCCAG 332 131 1070 Antisense
ATCATCCAGCTTCCTTGGCAGAAGA 643 29 1086 Antisense
TTTCCACCACGCAGCAATCTATCAA 627 669 1139 Antisense
GCTCCAAACAATACGCAATCTGCCA 4 299 1177 Antisense
AAGTCACCGTAGTTTCAGCTGATTT 598 157 1208 Antisense
AATTTACGGCGATGCTGTACACATT 508 175 1338 Antisense
GTACACATTGAATTCAGCACCCATG 253 461 1354 Antisense
GCACCCATGACTCATACTCGGAAGG 348 315 1370 Antisense
Sequence Source Affymetrix Proprietary Database