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[180917_at]

Description W02D7.4 /REP_DB=WormBase Gene ID /WP=CE14442 /TR=O17525 /GB=AAB63934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 41      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 27.2
(-2.2)
A 		33.2
(-1.2)
A 		57.8
(3)
A 		22.5
(-3)
A 		35
B 45.4
(-1.6)
A 		70
(3)
A 		45.2
(-1.7)
A 		38
(-3)
A 		32
C 33.6
(-3)
A 		56.5
(0.6)
A 		53.5
(0.1)
A 		71.6
(3)
A 		38
avr 35.4
(-3) 		53.2
(3) 		52.2
(2.7) 		44
(-0.1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 38.2
(-3)
A 		38.5
(-3)
A 		37.8
(-3)
A 		57.3
(-2.1)
A 		139.3
(1.6)
P 		169.9
(3)
P 		132
B 74.4
(-1.4)
A 		53.7
(-2.3)
A 		38
(-3)
A 		43.6
(-2.7)
A 		155.3
(2.3)
P 		172
(3)
P 		134
C 21
(-3)
A 		54.9
(-1.9)
A 		46.7
(-2.1)
A 		62.6
(-1.6)
A 		120.4
(0.4)
P 		198.9
(3)
P 		178
avr 44.5
(-2.8) 		49
(-2.6) 		40.8
(-3) 		54.5
(-2.4) 		138.3
(1.2) 		180.3
(3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.9
(0.4)
A 		7.2
(-1)
A 		15.1
(3)
A 		3.3
(-3)
A 		12
B 14.5
(1.2)
A 		17.3
(3)
A 		10.5
(-1.4)
A 		8.1
(-3)
A 		9
C 11.1
(-3)
A 		16.3
(1.2)
A 		18.6
(3)
A 		12.1
(-2.2)
A 		8
avr 11.8
(0.5) 		13.6
(2) 		14.7
(3) 		7.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 7
(-3)
A 		13.7
(-1.9)
A 		8.2
(-2.8)
A 		14.5
(-1.7)
A 		42
(3)
P 		41.4
(2.9)
P 		35
B 25.9
(-1.2)
A 		17.9
(-2)
A 		9.2
(-3)
A 		11.6
(-2.7)
A 		63.1
(2.9)
P 		64.1
(3)
P 		55
C 7.8
(-3)
A 		16.8
(-2.1)
A 		11.9
(-2.6)
A 		12.6
(-2.5)
A 		38.9
(0.2)
P 		66.6
(3)
P 		59
avr 13.6
(-2.5) 		16.1
(-2.2) 		9.8
(-3) 		12.9
(-2.6) 		48
(1.8) 		57.4
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12243
Sequence Type Exemplar sequence
Representative Public ID W02D7.4 NCBI
Target Description W02D7.4 /REP_DB=WormBase Gene ID /WP=CE14442 /TR=O17525 /GB=AAB63934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072741 NCBI Caenorhabditis elegans W02D7.4 (W02D7.4) mRNA, complete cds. 11/11 None
SNAP00000029332 ENSEMBL cdna:SNAP chromosome:CEL140:V:8299192:8300112:-1 11/11 None
GENEFINDER00000029344 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8299192:8300112:-1 11/11 None
W02D7.4 ENSEMBL cdna:known chromosome:CEL140:V:8299192:8300112:-1 gene:W02D7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8299192-8300113(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D7.4
Entrez Gene 189116 Entrez gene
SwissProt O17525 EMBL-EBI
WormBase CE14442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505142 W02D7.4 [Caenorhabditis elegans] gb|AAB63934.1| Hypothetical protein W02D7.4 [Caenorhabditis elegans] 1.0E-130
blast NP_505143 W02D7.5 [Caenorhabditis elegans] gb|AAB63935.2| Hypothetical protein W02D7.5 [Caenorhabditis elegans] 1.0E-109
blast CAE66081 Hypothetical protein CBG11298 [Caenorhabditis briggsae] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:180917_AT
ggaggagccatgttcaagagcgctaaaaatctccccagaaatatctcgtggcgttttcac
agctaccgtaacccgctgtctcactacacctttctcaacagttgtcctccaagaaaatgg
tgatttggctgcttgtcttttggcttctgtttggaatcgtactgatccacttgagaatgc
tgattttgatgatacaggtcttccggagaatttcaaactttttatccaatttttgaacaa
ggctcatttgaacttttggaaaattgctccaccaaacgtcaattccattattcacagaga
aattggaagcgtagctcctcagttcactcgacttggaattgctaccaaaatggttactac
taacatgacaaaacgtaacttgaaaaaatataacattggtggagttctctcggagaccac
atcacttgccaatcaaattgttctcgaaaaagctggttttaagtgcctcaaagagttgcc
atattcgacaattgttgattcaaaaggaaatcaagttttgaagttggatgatggtacaac
ttctctttgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGAGCCATGTTCAAGAGCGCTA 623 515 117 Antisense
ATCTCCCCAGAAATATCTCGTGGCG 637 31 145 Antisense
TTTCACAGCTACCGTAACCCGCTGT 149 653 171 Antisense
ACTACACCTTTCTCAACAGTTGTCC 214 89 199 Antisense
TGATTTGGCTGCTTGTCTTTTGGCT 594 563 237 Antisense
ATCGTACTGATCCACTTGAGAATGC 334 27 272 Antisense
CTCCACCAAACGTCAATTCCATTAT 185 235 383 Antisense
ATTGGAAGCGTAGCTCCTCAGTTCA 619 3 418 Antisense
TCCTCAGTTCACTCGACTTGGAATT 355 591 432 Antisense
TGGAGTTCTCTCGGAGACCACATCA 700 549 516 Antisense
ATGATGGTACAACTTCTCTTTGCCT 548 45 644 Antisense
Sequence Source Affymetrix Proprietary Database