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[180916_at]

Description C09D4.2 /REP_DB=WormBase Gene ID /WP=CE08031 /TR=O01734 /GB=AAB53977.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 63      6grp_total > 73      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4362
1 2 3 4 range
A 351.4
(-2.8)
P 		212.6
(-3)
P 		262.7
(-2.9)
P 		4325.1
(3)
P 		4113
B 370.5
(-2.8)
P 		252.9
(-3)
P 		264.1
(-3)
P 		3867.1
(3)
P 		3614
C 396.8
(-2.9)
P 		293.3
(-3)
P 		309.9
(-3)
P 		4574.5
(3)
P 		4281
avr 372.9
(-2.8) 		252.9
(-3) 		278.9
(-3) 		4255.6
(3) 		4003

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 623
1 2 3 4 5 6 range
A 343.4
(-3)
P 		522.4
(-1.3)
P 		877
(2.1)
P 		966
(3)
P 		731.8
(0.7)
P 		567.5
(-0.8)
P 		623
B 429.8
(-3)
P 		495.8
(-2.2)
P 		844.8
(2.2)
P 		744.8
(0.9)
P 		910.9
(3)
P 		748.8
(1)
P 		481
C 425.6
(-3)
P 		532.1
(-1.4)
P 		637.4
(0.3)
P 		815.9
(3)
P 		789.9
(2.6)
P 		793.8
(2.7)
P 		390
avr 399.6
(-3) 		516.8
(-1.4) 		786.4
(2.2) 		842.2
(3) 		810.9
(2.6) 		703.4
(1.1) 		443
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 778
1 2 3 4 range
A 127.9
(-2.2)
P 		46.2
(-3)
P 		68.7
(-2.8)
P 		633.1
(3)
P 		587
B 118.2
(-2.6)
P 		62.5
(-3)
P 		61.2
(-3)
P 		824.1
(3)
P 		763
C 131.4
(-2.6)
P 		84.3
(-3)
P 		108
(-2.8)
P 		771.3
(3)
P 		687
avr 125.8
(-2.5) 		64.3
(-3) 		79.3
(-2.9) 		742.8
(3) 		679

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 63.3
(-3)
P 		185.8
(1)
P 		191
(1.2)
P 		245
(3)
P 		220.8
(2.2)
P 		138.2
(-0.5)
P 		182
B 149.5
(-3)
P 		165
(-2.6)
P 		205.1
(-1.5)
P 		197.3
(-1.7)
P 		370.1
(3)
P 		279.2
(0.5)
P 		221
C 157.7
(-3)
P 		162.3
(-2.7)
P 		162.2
(-2.8)
P 		164.1
(-2.6)
P 		255.6
(2.4)
P 		265.7
(3)
P 		108
avr 123.5
(-3) 		171
(-1.2) 		186.1
(-0.6) 		202.1
(-0) 		282.2
(3) 		227.7
(0.9) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1351
Sequence Type Exemplar sequence
Representative Public ID C09D4.2 NCBI
Target Description C09D4.2 /REP_DB=WormBase Gene ID /WP=CE08031 /TR=O01734 /GB=AAB53977.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059210 NCBI Caenorhabditis elegans C09D4.2 (C09D4.2) mRNA, complete cds. 11/11 None
SNAP00000041668 ENSEMBL cdna:SNAP chromosome:CEL140:I:5491503:5493187:1 11/11 None
GENEFINDER00000041675 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5491503:5493893:1 11/11 None
C09D4.2 ENSEMBL cdna:known chromosome:CEL140:I:5491503:5493187:1 gene:C09D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5491502-5493187(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09D4.2
Entrez Gene 182446 Entrez gene
SwissProt O01734 EMBL-EBI
WormBase CE08031 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53977 Hypothetical protein C09D4.2 [Caenorhabditis elegans] ref|NP_491611.1| C09D4.2 [Caenorhabditis elegans] 1.0E-135
blast AAB53977 Hypothetical protein C09D4.2 [Caenorhabditis elegans] ref|NP_491611.1| C09D4.2 [Caenorhabditis elegans] 1.0E-123
blast CAE67068 Hypothetical protein CBG12476 [Caenorhabditis briggsae] 3.0E-94
blast CAE67068 Hypothetical protein CBG12476 [Caenorhabditis briggsae] 1.0E-83
blast CAE67067 Hypothetical protein CBG12475 [Caenorhabditis briggsae] 6.0E-44
Sequence
Target Sequence 
>C. ELEGANS:180916_AT
caactcatatgactgtgcacacggattcatacaaaatgaaagtatccacttcgaagcaag
ttgttcggaaagaactgtctctgagaactggttcatcaaacgagaacggatgtgcttgtg
tacacggaaattgtgcttgctgcctagaaatttctgttccagaattcagacattcagttt
gtgtcaatgcaacctataacccagtttccattggcttggatttgtcgattggagttgatg
gacattatttcagtgaagaaatatctttgagaaaccccccaccagtctgtttttctcttc
cgattcccggcgcagagcacattgcaggagtatgtgtggcattcacaaagttggacttgg
acaagaaggagaaaattctttccggatgcatggatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTCATATGACTGTGCACACGGA 174 187 314 Antisense
GTATCCACTTCGAAGCAAGTTGTTC 488 455 355 Antisense
GAACTGTCTCTGAGAACTGGTTCAT 298 349 385 Antisense
GAACGGATGTGCTTGTGTACACGGA 421 347 417 Antisense
GTACACGGAAATTGTGCTTGCTGCC 519 459 433 Antisense
GTGCTTGCTGCCTAGAAATTTCTGT 549 479 446 Antisense
GTGTCAATGCAACCTATAACCCAGT 241 485 494 Antisense
TATAACCCAGTTTCCATTGGCTTGG 535 659 508 Antisense
ATTGGCTTGGATTTGTCGATTGGAG 105 3 523 Antisense
CCGGCGCAGAGCACATTGCAGGAGT 172 265 620 Antisense
AATTCTTTCCGGATGCATGGATTTC 214 177 687 Antisense
Sequence Source Affymetrix Proprietary Database