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[180915_at]

Description T05H4.3 /REP_DB=WormBase Gene ID /WP=CE13273 /TR=O16524 /GB=AAB66021.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 59.8
(1)
A 		77.2
(3)
A 		53.6
(0.3)
A 		24
(-3)
A 		53
B 55.6
(3)
A 		33
(0.4)
A 		3.6
(-3)
A 		40.1
(1.2)
A 		52
C 27.7
(-0.6)
A 		56.2
(2.2)
A 		3.6
(-3)
A 		64.6
(3)
A 		61
avr 47.7
(1.7) 		55.5
(3) 		20.3
(-3) 		42.9
(0.9) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 128
(3)
A 		41
(-1.8)
A 		24.6
(-2.7)
A 		25.3
(-2.6)
A 		25.5
(-2.6)
A 		18.7
(-3)
A 		109
B 53.5
(0.2)
A 		50
(-0.2)
A 		78.9
(3)
A 		61.3
(1.1)
A 		24.5
(-3)
A 		31.9
(-2.2)
A 		54
C 26.7
(-1.8)
A 		84.3
(3)
A 		12.4
(-3)
A 		67.4
(1.6)
A 		45.4
(-0.2)
A 		28.6
(-1.6)
A 		72
avr 69.4
(3) 		58.4
(1.5) 		38.6
(-1.3) 		51.3
(0.5) 		31.8
(-2.2) 		26.4
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21.8
(3)
A 		16.8
(1.4)
A 		14
(0.4)
A 		3.5
(-3)
A 		18
B 17.7
(3)
A 		8.1
(-0.4)
A 		0.8
(-3)
A 		8.5
(-0.3)
A 		17
C 9.2
(0.2)
A 		16.2
(3)
A 		1.3
(-3)
A 		10.9
(0.9)
A 		15
avr 16.2
(3) 		13.7
(1.6) 		5.4
(-3) 		7.6
(-1.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 23.6
(3)
A 		14.6
(0.2)
A 		5.4
(-2.7)
A 		6.4
(-2.4)
A 		7.7
(-2)
A 		4.5
(-3)
A 		19
B 18.6
(2.6)
A 		16.6
(1.3)
A 		19.2
(3)
A 		16.2
(1.1)
A 		9.9
(-3)
A 		11.9
(-1.7)
A 		9
C 9.9
(-1.2)
A 		25.7
(3)
A 		3.1
(-3)
A 		13.6
(-0.2)
A 		14.7
(0.1)
A 		9.6
(-1.3)
A 		23
avr 17.4
(2.1) 		19
(3) 		9.2
(-2.7) 		12.1
(-1) 		10.8
(-1.8) 		8.7
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11929
Sequence Type Exemplar sequence
Representative Public ID T05H4.3 NCBI
Target Description T05H4.3 /REP_DB=WormBase Gene ID /WP=CE13273 /TR=O16524 /GB=AAB66021.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072240 NCBI Caenorhabditis elegans T05H4.3 (T05H4.3) mRNA, complete cds. 11/11 None
GENEFINDER00000040324 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6444931:6450150:1 11/11 None
T05H4.3 ENSEMBL cdna:known chromosome:CEL140:V:6444931:6450150:1 gene:T05H4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040312 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6444930-6450150(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05H4.3
Entrez Gene 188149 Entrez gene
SwissProt O16524 EMBL-EBI
WormBase CE13273 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504641 T05H4.3 [Caenorhabditis elegans] gb|AAB66021.1| Hypothetical protein T05H4.3 [Caenorhabditis elegans] 0.0
blast CAE71884 Hypothetical protein CBG18939 [Caenorhabditis briggsae] 0.0
blast XP_691977 PREDICTED: similar to predicted CDS, internalin A (5G927) [Danio rerio] 8.0E-24
blast XP_691977 PREDICTED: similar to predicted CDS, internalin A (5G927) [Danio rerio] 1.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.022
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.46
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.076
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.11
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.9
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.15
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.32
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.12
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.073
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.46
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.076
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.11
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.9
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.15
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.32
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.12
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.073
Sequence
Target Sequence 
>C. ELEGANS:180915_AT
gattgttctctatttgatcttccgaatttggaatcagttgatttgagtaacaactcgata
aaaacaattatcagacgcccattgaaaactttaacttccttgaatcttcaaaataacaaa
ttgacaactctaactccattgtcatgccctaatctagtgtcattagatatttcaaacaat
aaacttgcgtcttgtgcatctttgaagcctctctgcgaatgcaagactctggaaaatttg
gactgtaggaacaattcagtaacggagagaagggtttatgttgattttatcaaagcacag
gttccatctgttagaaaactagatgacgagattatgagcaatgaaattgaaattacgaaa
cgaagattgtctcgagcaaatgatttgatctcgatgagcagaagaagcagtatggtgacc
tcgtcgatgctatcttggttcgagagagaagagggtgaaactctggaaaacgtgaaaagg
gcttcaagttttctagaaccaagtgcagctgaaacccccatgagaccacgacggcttgaa
cctcttcccggaagacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTTCTCTATTTGATCTTCCGA 266 435 2848 Antisense
CAGACGCCCATTGAAAACTTTAACT 84 201 2919 Antisense
ACAACTCTAACTCCATTGTCATGCC 331 113 2971 Antisense
TGTCATGCCCTAATCTAGTGTCATT 363 559 2987 Antisense
AAACTTGCGTCTTGTGCATCTTTGA 597 127 3028 Antisense
ATCTTTGAAGCCTCTCTGCGAATGC 255 31 3045 Antisense
GAAGCAGTATGGTGACCTCGTCGAT 467 339 3251 Antisense
CCTCGTCGATGCTATCTTGGTTCGA 298 267 3266 Antisense
AGAACCAAGTGCAGCTGAAACCCCC 638 69 3342 Antisense
CCATGAGACCACGACGGCTTGAACC 29 271 3365 Antisense
GCTTGAACCTCTTCCCGGAAGACGT 485 303 3381 Antisense
Sequence Source Affymetrix Proprietary Database