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[180914_at]

Description C33A12.2 /REP_DB=WormBase Gene ID /WP=CE05348 /TR=Q18356 /GB=CAA92786.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 30      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 23      6grp_total > 40      4grp_total > 14      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2499
1 2 3 4 range
A 2551.8
(1.6)
P 		894.6
(-2.3)
P 		621.9
(-3)
P 		3121
(3)
P 		2499
B 2450.2
(1.7)
P 		1087.8
(-2)
P 		715.2
(-3)
P 		2929.2
(3)
P 		2214
C 2559.7
(2.8)
P 		1101.4
(-1.8)
P 		703.8
(-3)
P 		2629.6
(3)
P 		1926
avr 2520.6
(2) 		1027.9
(-2.1) 		680.3
(-3) 		2893.3
(3) 		2213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1630
1 2 3 4 5 6 range
A 1646.2
(-1.6)
P 		1753
(-1.2)
P 		2889.7
(3)
P 		1874.6
(-0.7)
P 		1316.2
(-2.8)
P 		1260.1
(-3)
P 		1630
B 2160.8
(0.9)
P 		2369.3
(2)
P 		2570.9
(3)
P 		2202.8
(1.1)
P 		1400.5
(-3)
P 		1858.2
(-0.7)
P 		1170
C 1673.9
(-1.5)
P 		2486.5
(3)
P 		1656.1
(-1.6)
P 		2029.5
(0.5)
P 		1406.9
(-3)
P 		1728.1
(-1.2)
P 		1080
avr 1827
(-0.3) 		2202.9
(2) 		2372.2
(3) 		2035.6
(1) 		1374.5
(-3) 		1615.5
(-1.6) 		998
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 767
1 2 3 4 range
A 929.1
(3)
P 		194.2
(-2.8)
P 		162.6
(-3)
P 		456.9
(-0.7)
P 		767
B 781.4
(3)
P 		268.7
(-2)
P 		165.7
(-3)
P 		624.2
(1.5)
P 		616
C 847.3
(3)
P 		316.7
(-2.3)
P 		245.3
(-3)
P 		443.4
(-1)
P 		602
avr 852.6
(3) 		259.9
(-2.4) 		191.2
(-3) 		508.2
(-0.1) 		661

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 485
1 2 3 4 5 6 range
A 303.5
(-3)
P 		623.4
(2.9)
P 		629.3
(3)
P 		475.4
(0.2)
P 		397.2
(-1.3)
P 		306.8
(-2.9)
P 		326
B 751.9
(2)
P 		788.6
(3)
P 		624.3
(-1.5)
P 		583.5
(-2.6)
P 		569
(-3)
P 		692.9
(0.4)
P 		220
C 620.4
(0.6)
P 		758.7
(3)
P 		421.5
(-2.8)
P 		408.1
(-3)
P 		455.2
(-2.2)
P 		578.5
(-0.1)
P 		351
avr 558.6
(-1) 		723.6
(3) 		558.4
(-1) 		489
(-2.6) 		473.8
(-3) 		526.1
(-1.7) 		250
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180914_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9012
Sequence Type Exemplar sequence
Representative Public ID C33A12.2 NCBI
Target Description C33A12.2 /REP_DB=WormBase Gene ID /WP=CE05348 /TR=Q18356 /GB=CAA92786.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069286 NCBI Caenorhabditis elegans C33A12.2 (C33A12.2) mRNA, complete cds. 11/11 None
SNAP00000009030 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9518535:9518877:-1 11/11 None
GENEFINDER00000009033 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9518535:9518877:-1 11/11 None
C33A12.2 ENSEMBL cdna:known chromosome:CEL140:IV:9518362:9518904:-1 gene:C33A12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9518540-9518883(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33A12.2
Entrez Gene 183138 Entrez gene
SwissProt Q18356 EMBL-EBI
WormBase CE05348 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92786 Hypothetical protein C33A12.2 [Caenorhabditis elegans] ref|NP_501687.1| C33A12.2 [Caenorhabditis elegans] 2.0E-25
blast CAE72768 Hypothetical protein CBG20018 [Caenorhabditis briggsae] 1.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501687.1 1 7-29
C33A12.2 1 7-29
SNAP00000009030 1 7-29
GENEFINDER00000009033 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180914_AT
cattcattgtgtttcttaccttcatggtggcactactagcagtcagtcatgctgcagttg
tatctggatatgacaatatttatcaagttctcgcaccaagattccgacgtgctcgtatga
tgagtttcgacgctgaagctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCATTGTGTTTCTTACCTTCAT 191 217 29 Antisense
GTGTTTCTTACCTTCATGGTGGCAC 84 487 37 Antisense
TTACCTTCATGGTGGCACTACTAGC 32 629 44 Antisense
GTGGCACTACTAGCAGTCAGTCATG 157 491 55 Antisense
GTCAGTCATGCTGCAGTTGTATCTG 192 467 70 Antisense
GCTGCAGTTGTATCTGGATATGACA 21 297 79 Antisense
GACAATATTTATCAAGTTCTCGCAC 268 365 100 Antisense
CAAGTTCTCGCACCAAGATTCCGAC 130 185 112 Antisense
ACCAAGATTCCGACGTGCTCGTATG 295 83 123 Antisense
CCGACGTGCTCGTATGATGAGTTTC 584 263 132 Antisense
GATGAGTTTCGACGCTGAAGCTCCA 682 409 147 Antisense
Sequence Source Affymetrix Proprietary Database