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[180912_at]

Description W06H12.1 /REP_DB=WormBase Gene ID /WP=CE25145 /TR=O62396 /GB=CAB63395.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 53      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 216.7
(3)
P 		117.5
(0.1)
A 		75.2
(-1.2)
A 		12.4
(-3)
A 		204
B 272.6
(3)
P 		179.5
(0.9)
A 		130.8
(-0.2)
A 		3
(-3)
A 		270
C 272.2
(3)
P 		218.3
(1.8)
A 		86.1
(-1.3)
A 		10.9
(-3)
A 		261
avr 253.8
(3) 		171.8
(1) 		97.4
(-0.8) 		8.8
(-3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 200.4
(3)
A 		153.2
(1.2)
P 		77.6
(-1.7)
A 		105.1
(-0.7)
A 		44
(-3)
A 		81
(-1.6)
A 		156
B 159.6
(3)
A 		150.9
(2.6)
A 		93.2
(-0.3)
A 		113.5
(0.7)
A 		42.8
(-2.8)
A 		39.8
(-3)
A 		120
C 500.3
(3)
P 		84.1
(-2.3)
A 		197.2
(-0.8)
A 		27.8
(-3)
A 		70.1
(-2.5)
A 		57.3
(-2.6)
A 		473
avr 286.8
(3) 		129.4
(-1) 		122.7
(-1.2) 		82.1
(-2.2) 		52.3
(-3) 		59.4
(-2.8) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 78.9
(3)
P 		25.5
(-1.2)
A 		19.7
(-1.6)
A 		1.8
(-3)
A 		77
B 86.9
(3)
P 		44.3
(0)
A 		30.3
(-0.9)
A 		0.6
(-3)
A 		86
C 90.1
(3)
P 		62.8
(1.1)
A 		30
(-1.1)
A 		1.8
(-3)
A 		88
avr 85.3
(3) 		44.2
(0.1) 		26.7
(-1.2) 		1.4
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 36.9
(0.4)
A 		54.5
(3)
P 		16.9
(-2.5)
A 		26.6
(-1.1)
A 		13.3
(-3)
A 		19.7
(-2.1)
A 		41
B 55.5
(3)
A 		50.2
(2.2)
A 		22.6
(-1.9)
A 		30.1
(-0.7)
A 		17.4
(-2.6)
A 		14.8
(-3)
A 		41
C 185.4
(3)
P 		25.7
(-2.3)
A 		50.2
(-1.5)
A 		5.6
(-3)
A 		22.7
(-2.4)
A 		19.2
(-2.5)
A 		180
avr 92.6
(3) 		43.5
(-0.9) 		29.9
(-2) 		20.8
(-2.8) 		17.8
(-3) 		17.9
(-3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1611
Sequence Type Exemplar sequence
Representative Public ID W06H12.1 NCBI
Target Description W06H12.1 /REP_DB=WormBase Gene ID /WP=CE25145 /TR=O62396 /GB=CAB63395.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060476 NCBI Caenorhabditis elegans W06H12.1 (W06H12.1) mRNA, complete cds. 11/11 None
SNAP00000030279 ENSEMBL cdna:SNAP chromosome:CEL140:I:11216324:11219425:1 11/11 None
GENEFINDER00000030288 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11216567:11219794:1 11/11 None
W06H12.1.1 ENSEMBL cdna:known chromosome:CEL140:I:11215041:11220031:1 gene:W06H12.1 11/11 None
W06H12.1.2 ENSEMBL cdna:known chromosome:CEL140:I:11215046:11219433:1 gene:W06H12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11215040-11219356(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ztf-6
Ensembl W06H12.1
Entrez Gene 173014 Entrez gene
SwissProt O62396 EMBL-EBI
WormBase CE25145 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04928 Hypothetical protein W06H12.1 [Caenorhabditis elegans] emb|CAB63395.1| Hypothetical protein W06H12.1 [Caenorhabditis elegans] ref|NP_492877.1| W06H12.1 [Caenorhabditis elegans] 0.0
blast CAB04928 Hypothetical protein W06H12.1 [Caenorhabditis elegans] emb|CAB63395.1| Hypothetical protein W06H12.1 [Caenorhabditis elegans] ref|NP_492877.1| W06H12.1 [Caenorhabditis elegans] 1.0E-147
blast CAE63489 Hypothetical protein CBG07957 [Caenorhabditis briggsae] 1.0E-122
blast CAE63489 Hypothetical protein CBG07957 [Caenorhabditis briggsae] 1.0E-93
blast CAE63489 Hypothetical protein CBG07957 [Caenorhabditis briggsae] 3.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030288 2 415-437,449-471
Sequence
Target Sequence 
>C. ELEGANS:180912_AT
aaccaacaagccggcaatgcgatcctcgacgcgggctccagtgaaaatgacggatccacg
tcatcatcccaaccatcaccaccagccgatccaacagcctcacttgactcgctggcaatg
ttcgaatcacttttagccgagtcgatgaacgggaatgtgctcgatgcgaatacctcgtca
gctgaccagaaagcggcggctcgcaagcgaaagagcacaccgatgaaggttccgaagtcg
gaaaatggtgctggatatatttgtccgatggatggatgtaataaggtgttcaaggagaaa
ggatcagtgcatcgacattttgttacgcatattggaatgcgttttaattgtgacaaatgc
aaggcctcgtacacccaaaagcatgctctaatgctccatcagaagattcatgccaatccg
gacgcctatcagtgtagaggatgcggtaccaattatacaacacaaaatggtcttcgattg
catagacagagaaatccagcatgcatggaagtgagcaacgcccttgaattcaacacctcc
ctgaatacctcaattagtgaagcgctgtctggcccgctgagcaaaaactcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAACAAGCCGGCAATGCGATCC 238 147 832 Antisense
CTCGACGCGGGCTCCAGTGAAAATG 85 233 856 Antisense
TGCTCGATGCGAATACCTCGTCAGC 176 581 989 Antisense
CTGACCAGAAAGCGGCGGCTCGCAA 165 237 1013 Antisense
TGACAAATGCAAGGCCTCGTACACC 365 571 1182 Antisense
CATGCTCTAATGCTCCATCAGAAGA 497 209 1213 Antisense
AGAAGATTCATGCCAATCCGGACGC 660 73 1232 Antisense
GTGAGCAACGCCCTTGAATTCAACA 654 479 1342 Antisense
CACCTCCCTGAATACCTCAATTAGT 596 199 1365 Antisense
CAATTAGTGAAGCGCTGTCTGGCCC 78 181 1382 Antisense
TCTGGCCCGCTGAGCAAAAACTCGT 337 595 1399 Antisense
Sequence Source Affymetrix Proprietary Database