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[180911_at]

Description F52E1.9 /REP_DB=WormBase Gene ID /WP=CE04637 /TR=Q20664 /GB=AAB37042.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 83      4grp_total > 58      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 156.2
(-0.2)
P 		234.7
(1.9)
P 		275.6
(3)
P 		53.5
(-3)
A 		222
B 201.6
(-0.8)
P 		329.9
(3)
P 		311.9
(2.5)
P 		127.2
(-3)
A 		203
C 219.3
(-0.6)
P 		239
(-0.2)
P 		376
(3)
P 		116.2
(-3)
A 		260
avr 192.4
(-0.5) 		267.9
(1.6) 		321.2
(3) 		99
(-3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 297.4
(-2.2)
M 		352.1
(-1.1)
P 		257.2
(-3)
P 		344.1
(-1.2)
P 		550.8
(3)
P 		347.9
(-1.1)
P 		294
B 209.5
(-3)
P 		279.3
(-1.1)
P 		353.9
(0.9)
P 		430.7
(3)
P 		431.7
(3)
P 		256.3
(-1.7)
P 		222
C 388.1
(0.9)
P 		231.7
(-3)
P 		236.4
(-2.9)
P 		475
(3)
P 		422.8
(1.7)
P 		276.3
(-1.9)
P 		243
avr 298.3
(-2.5) 		287.7
(-2.8) 		282.5
(-3) 		416.6
(1.3) 		468.4
(3) 		293.5
(-2.6) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 56.9
(1.6)
P 		51
(1)
P 		72
(3)
P 		7.8
(-3)
A 		64
B 64.3
(1.1)
P 		81.5
(3)
P 		72.3
(2)
P 		27.1
(-3)
A 		54
C 72.6
(-0.1)
P 		68.7
(-0.4)
P 		131.1
(3)
P 		19.6
(-3)
A 		112
avr 64.6
(0.8) 		67.1
(1) 		91.8
(3) 		18.2
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 54.8
(-3)
M 		125.2
(0.8)
P 		56
(-2.9)
P 		87.3
(-1.2)
P 		166.2
(3)
P 		84.7
(-1.4)
P 		111
B 72.9
(-3)
P 		93
(-1.8)
P 		85.9
(-2.2)
P 		114.1
(-0.6)
P 		175.4
(3)
P 		95.6
(-1.7)
P 		103
C 143.9
(3)
P 		70.7
(-2.2)
P 		60.2
(-3)
P 		95.5
(-0.5)
P 		136.8
(2.5)
P 		92.5
(-0.7)
P 		84
avr 90.5
(-1.5) 		96.3
(-1.1) 		67.4
(-3) 		99
(-0.9) 		159.5
(3) 		90.9
(-1.5) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11919
Sequence Type Exemplar sequence
Representative Public ID F52E1.9 NCBI
Target Description F52E1.9 /REP_DB=WormBase Gene ID /WP=CE04637 /TR=Q20664 /GB=AAB37042.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072768(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072768 NCBI Caenorhabditis elegans F52E1.9 (F52E1.9) mRNA, complete cds. 10/11 None
SNAP00000034425 ENSEMBL cdna:SNAP chromosome:CEL140:V:8401185:8401927:-1 10/11 None
GENEFINDER00000034440 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8401185:8401927:-1 11/11 None
F52E1.9 ENSEMBL cdna:known chromosome:CEL140:V:8400757:8401938:-1 gene:F52E1.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8401185-8401928(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52E1.9
Entrez Gene 186115 Entrez gene
SwissProt Q20664 EMBL-EBI
WormBase CE35324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37042 Hypothetical protein F52E1.9 [Caenorhabditis elegans] ref|NP_505169.2| F52E1.9 [Caenorhabditis elegans] 3.0E-88
blast CAE66055 Hypothetical protein CBG11259 [Caenorhabditis briggsae] 9.0E-86
blast AAB37042 Hypothetical protein F52E1.9 [Caenorhabditis elegans] ref|NP_505169.2| F52E1.9 [Caenorhabditis elegans] 3.0E-85
blast CAE66055 Hypothetical protein CBG11259 [Caenorhabditis briggsae] 2.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505169.2 2 103-125,130-147
F52E1.9 2 103-125,130-147
SNAP00000034425 2 103-125,130-147
GENEFINDER00000034440 2 116-138,143-160
Sequence
Target Sequence 
>C. ELEGANS:180911_AT
tcatggcctcctggacaagcatttccttttgaaccattgccaccatatccagcagctgcg
actagaatcagattttttcaatactcgcgaactggtccaaatctctcaaaaatccgctac
ccccgtgaagtgacctgtccccgttacgtatgtccacactgtgacgaacaattcctattc
cactcaacaaacggactcctcacttgcccattttgctacacatcaattgcaattggcact
tataatcgcaaacaaatgtacctgaacttcgttgtcggcacaattgttctcattatttcc
atggtaatgacaatcctcgtattcacaattgcaaaggatcaagtctatctttcgattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGGCCTCCTGGACAAGCATTTC 664 621 97 Antisense
CATTTCCTTTTGAACCATTGCCACC 428 215 116 Antisense
CAATACTCGCGAACTGGTCCAAATC 245 179 175 Antisense
GGTCCAAATCTCTCAAAAATCCGCT 149 503 190 Antisense
CCGTTACGTATGTCCACACTGTGAC 261 265 237 Antisense
GACGAACAATTCCTATTCCACTCAA 674 379 259 Antisense
CTCAACAAACGGACTCCTCACTTGC 268 227 279 Antisense
CTTGCCCATTTTGCTACACATCAAT 357 219 299 Antisense
ATGTACCTGAACTTCGTTGTCGGCA 457 47 352 Antisense
GTTGTCGGCACAATTGTTCTCATTA 426 437 367 Antisense
GGATCAAGTCTATCTTTCGATTCCA 355 511 432 Antisense
Sequence Source Affymetrix Proprietary Database