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[180910_at]

Description R10F2.6 /REP_DB=WormBase Gene ID /WP=CE12712 /TR=O01913 /GB=AAB54269.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 39      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 9.2
(-3)
A 		10.7
(-0.8)
A 		12.6
(2.1)
A 		13.2
(3)
A 		4
B 35
(3)
A 		8
(-2.2)
A 		21.9
(0.5)
A 		4.1
(-3)
A 		31
C 36.8
(3)
A 		9.3
(-2.9)
A 		8.7
(-3)
A 		29.7
(1.5)
A 		28
avr 27
(3) 		9.3
(-3) 		14.4
(-1.3) 		15.7
(-0.8) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 7.7
(-2.8)
A 		14.9
(-2.3)
A 		5.3
(-3)
A 		5.5
(-3)
A 		49.6
(0.3)
A 		86.5
(3)
A 		81
B 7.9
(-2.7)
A 		7.3
(-2.8)
A 		6.5
(-2.9)
A 		5.6
(-3)
A 		36
(0.7)
A 		54.3
(3)
A 		49
C 19.2
(-1.4)
A 		5.4
(-3)
A 		8.8
(-2.6)
A 		16
(-1.7)
A 		29.2
(-0.2)
A 		55.8
(3)
A 		50
avr 11.6
(-2.5) 		9.2
(-2.8) 		6.9
(-3) 		9
(-2.8) 		38.3
(0.2) 		65.5
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.3
(3)
A 		2.3
(-1.3)
A 		3.3
(3)
A 		1.9
(-3)
A 		1
B 11.2
(3)
A 		2
(-2.4)
A 		5.1
(-0.6)
A 		0.9
(-3)
A 		10
C 12.2
(3)
A 		2.7
(-3)
A 		3
(-2.8)
A 		5
(-1.5)
A 		10
avr 8.9
(3) 		2.3
(-3) 		3.8
(-1.6) 		2.6
(-2.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		5.3
(-1.8)
A 		1.2
(-3)
A 		1.4
(-2.9)
A 		15
(1.2)
A 		21.1
(3)
A 		20
B 2.7
(-2.6)
A 		2.4
(-2.7)
A 		1.6
(-3)
A 		1.5
(-3)
A 		14.6
(1.2)
A 		20.3
(3)
A 		19
C 7.1
(-1.1)
A 		1.7
(-3)
A 		2.2
(-2.8)
A 		3.2
(-2.5)
A 		9.5
(-0.2)
A 		18.7
(3)
A 		17
avr 3.7
(-2.3) 		3.1
(-2.5) 		1.7
(-3) 		2
(-2.9) 		13
(0.7) 		20
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8057
Sequence Type Exemplar sequence
Representative Public ID R10F2.6 NCBI
Target Description R10F2.6 /REP_DB=WormBase Gene ID /WP=CE12712 /TR=O01913 /GB=AAB54269.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065241 NCBI Caenorhabditis elegans R10F2.6 (R10F2.6) mRNA, complete cds. 11/11 None
SNAP00000016978 ENSEMBL cdna:SNAP chromosome:CEL140:III:2937093:2943670:-1 11/11 None
GENEFINDER00000016979 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2937093:2943670:-1 11/11 None
R10F2.6 ENSEMBL cdna:known chromosome:CEL140:III:2937093:2943632:-1 gene:R10F2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2937092-2943632(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10F2.6
Entrez Gene 175405 Entrez gene
SwissProt O01913 EMBL-EBI
WormBase CE12712 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497642 R10F2.6 [Caenorhabditis elegans] gb|AAB54269.1| Hypothetical protein R10F2.6 [Caenorhabditis elegans] 0.0
blast CAE58362 Hypothetical protein CBG01487 [Caenorhabditis briggsae] 1.0E-116
blast CAE58362 Hypothetical protein CBG01487 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-31
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-35
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-31
Sequence
Target Sequence 
>C. ELEGANS:180910_AT
attgttcagatggttcaagcccctccgcgagctacgtgtccgtatgcctgaacgtctcga
agcctaccaagacgttgttattgctcagcagaaagactacctacaactcgaagcccgtca
ctgggccacgtactttgaatatgagatggagcggttcatccgaatggagtatatggtgga
acatgttcagaagcagcgggatggtgatcgacacgagatgcgggagcttcgaaaaaccga
caggcttcatcaagcgatgactgcaagtgaggagagggatgagagaagtccgtactttga
cggaaagcccattcgtcgcaagccgttgcgtctaggtgataagccaagggatccgaaacg
tccaaaaagacaatacgtgaagcgcgaggactttttgcctgaacatgagctttactcggc
gcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTTCAGATGGTTCAAGCCCCTC 528 5 2871 Antisense
TACGTGTCCGTATGCCTGAACGTCT 114 641 2903 Antisense
TGAACGTCTCGAAGCCTACCAAGAC 382 573 2919 Antisense
AAGACGTTGTTATTGCTCAGCAGAA 570 151 2939 Antisense
GAAAGACTACCTACAACTCGAAGCC 393 355 2961 Antisense
CGTCACTGGGCCACGTACTTTGAAT 560 243 2986 Antisense
GATCGACACGAGATGCGGGAGCTTC 439 417 3076 Antisense
GACGGAAAGCCCATTCGTCGCAAGC 666 375 3169 Antisense
GCAAGCCGTTGCGTCTAGGTGATAA 326 321 3188 Antisense
GAAGCGCGAGGACTTTTTGCCTGAA 37 345 3249 Antisense
AACATGAGCTTTACTCGGCGCTTGA 149 137 3272 Antisense
Sequence Source Affymetrix Proprietary Database