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[180909_at]

Description C32H11.4 /REP_DB=WormBase Gene ID /WP=CE19711 /TR=Q9XUH7 /GB=CAB05131.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 60      6grp_total > 08      4grp_total > 46      6grp_highest_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6900
1 2 3 4 range
A 7140.7
(3)
P 		2026.5
(-1.7)
P 		1407.9
(-2.2)
P 		548.7
(-3)
P 		6592
B 7045.1
(3)
P 		1727
(-1.8)
P 		1257
(-2.2)
P 		399.3
(-3)
P 		6646
C 7299.3
(3)
P 		1755.7
(-1.9)
P 		1098.9
(-2.4)
P 		450.7
(-3)
P 		6849
avr 7161.7
(3) 		1836.4
(-1.8) 		1254.6
(-2.3) 		466.2
(-3) 		6696

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 773
1 2 3 4 5 6 range
A 849.6
(3)
P 		245.8
(-2.4)
P 		364.9
(-1.3)
P 		409.6
(-0.9)
P 		180.5
(-3)
P 		183.2
(-3)
P 		669
B 940.2
(3)
P 		340.4
(-1.7)
P 		321.1
(-1.8)
P 		382.9
(-1.3)
P 		167.2
(-3)
P 		209.4
(-2.7)
P 		773
C 807.7
(3)
P 		314.3
(-1.7)
P 		288
(-1.9)
P 		393.8
(-0.9)
P 		183.1
(-2.9)
P 		174.9
(-3)
P 		633
avr 865.8
(3) 		300.2
(-1.9) 		324.7
(-1.7) 		395.4
(-1.1) 		176.9
(-3) 		189.2
(-2.9) 		689
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2524
1 2 3 4 range
A 2599.9
(3)
P 		439.9
(-2.1)
P 		368
(-2.3)
P 		80.3
(-3)
P 		2520
B 2246.6
(3)
P 		426.5
(-2.1)
P 		291.3
(-2.4)
P 		85.1
(-3)
P 		2162
C 2416.3
(3)
P 		504.8
(-1.9)
P 		383
(-2.2)
P 		76
(-3)
P 		2340
avr 2420.9
(3) 		457.1
(-2) 		347.4
(-2.3) 		80.5
(-3) 		2340

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 156.6
(3)
P 		87.4
(-0.7)
P 		79.5
(-1.1)
P 		103.9
(0.2)
P 		54.5
(-2.5)
P 		44.6
(-3)
P 		112
B 327.1
(3)
P 		113.3
(-1.9)
P 		78
(-2.8)
P 		101.4
(-2.2)
P 		67.9
(-3)
P 		78.1
(-2.8)
P 		259
C 299.4
(3)
P 		95.9
(-2.1)
P 		73.3
(-2.6)
P 		79.2
(-2.5)
P 		59.2
(-3)
P 		58.6
(-3)
P 		241
avr 261
(3) 		98.9
(-1.8) 		76.9
(-2.5) 		94.8
(-2) 		60.5
(-3) 		60.4
(-3) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8732
Sequence Type Exemplar sequence
Representative Public ID C32H11.4 NCBI
Target Description C32H11.4 /REP_DB=WormBase Gene ID /WP=CE19711 /TR=Q9XUH7 /GB=CAB05131.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070065 NCBI Caenorhabditis elegans C32H11.4 (C32H11.4) mRNA, complete cds. 11/11 None
SNAP00000038553 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12921290:12923180:1 11/11 None
GENEFINDER00000038575 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12921290:12923180:1 11/11 None
C32H11.4 ENSEMBL cdna:known chromosome:CEL140:IV:12921290:12923229:1 gene:C32H11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12921295-12923186(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32H11.4
Entrez Gene 178244 Entrez gene
SwissProt Q9XUH7 EMBL-EBI
WormBase CE19711 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05131 Hypothetical protein C32H11.4 [Caenorhabditis elegans] ref|NP_502466.1| C32H11.4 [Caenorhabditis elegans] 0.0
blast CAB05130 Hypothetical protein C32H11.3 [Caenorhabditis elegans] ref|NP_502465.1| C32H11.3 [Caenorhabditis elegans] 1.0E-128
blast CAE56623 Hypothetical protein CBG24379 [Caenorhabditis briggsae] 4.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.4E-50
Sequence
Target Sequence 
>C. ELEGANS:180909_AT
tgcagccacatgtccttaatatcacacaggatctgtttgcggccgatttcagttcagaca
aagttgctcttttcgtctctccagccgatccaaatgactattattccctgagaagctctc
ttgtttttgagggacaagattacaatggaaactttgttgcaaacttgtacacgctctatg
aaacgcaccagcaatgggtttctaaaggcagcatggtctatatcgtaaacttggaggcca
gcaacaaaaccgacattctgttagttcaagatatacaatatgcaaactttgttgactacg
tcgaacttaactgttacggcgtgtcaacatgttccgcttctgttgatggtggtgatggaa
aatctgccgttctttctttatatgcctcccgaagcaacgaaactttggttgatattaaaa
tggacccgagtgcaacaatgaaagtctactacggatctgaaactgcgttcggctttgatt
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGCCACATGTCCTTAATATCAC 78 579 455 Antisense
TCACACAGGATCTGTTTGCGGCCGA 230 629 476 Antisense
TTGCGGCCGATTTCAGTTCAGACAA 307 701 491 Antisense
TCTCCAGCCGATCCAAATGACTATT 361 609 532 Antisense
GTTGCAAACTTGTACACGCTCTATG 480 439 610 Antisense
ACACGCTCTATGAAACGCACCAGCA 29 111 623 Antisense
AGGCCAGCAACAAAACCGACATTCT 680 53 689 Antisense
ATGTTCCGCTTCTGTTGATGGTGGT 683 45 783 Antisense
ATCTGCCGTTCTTTCTTTATATGCC 661 33 816 Antisense
ATATGCCTCCCGAAGCAACGAAACT 630 17 834 Antisense
GAAACTGCGTTCGGCTTTGATTCAA 443 357 913 Antisense
Sequence Source Affymetrix Proprietary Database