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[180908_s_at]

Description T26E4.12 /REP_DB=WormBase Gene ID /WP=CE16483 /TR=O45838 /GB=CAB03433.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 32.1
(-2.5)
A 		9.6
(-3)
A 		18.1
(-2.8)
A 		275.9
(3)
P 		266
B 4
(-3)
A 		38.4
(-2.2)
A 		7
(-2.9)
A 		269.2
(3)
P 		265
C 17.7
(-2.6)
A 		19.1
(-2.6)
A 		2.2
(-3)
A 		258.1
(3)
P 		256
avr 17.9
(-2.8) 		22.4
(-2.7) 		9.1
(-3) 		267.7
(3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 4.3
(-3)
A 		5.3
(-2.9)
A 		15.6
(-2.1)
A 		8.1
(-2.7)
A 		44.7
(0.4)
A 		75.9
(3)
P 		72
B 17.6
(-1.6)
A 		5
(-3)
A 		7
(-2.8)
A 		19.5
(-1.4)
A 		29.4
(-0.3)
A 		59.9
(3)
P 		55
C 3.3
(-2.8)
A 		4.6
(-2.5)
A 		8.4
(-1.8)
A 		2.1
(-3)
A 		34
(3)
A 		33.7
(2.9)
A 		32
avr 8.4
(-2.6) 		5
(-3) 		10.3
(-2.4) 		9.9
(-2.4) 		36
(0.6) 		56.5
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 11.7
(-1.5)
A 		2.1
(-3)
A 		4.7
(-2.6)
A 		40.4
(3)
P 		38
B 1.3
(-3)
A 		9.5
(-2.1)
A 		1.6
(-3)
A 		57.4
(3)
P 		56
C 5.9
(-2.3)
A 		5.5
(-2.3)
A 		0.8
(-3)
A 		43.5
(3)
P 		43
avr 6.3
(-2.5) 		5.7
(-2.6) 		2.4
(-3) 		47.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.9
(-2.6)
A 		3.4
(-2.1)
A 		2
(-2.6)
A 		13.5
(1.3)
A 		18.5
(3)
P 		18
B 6.1
(-1.7)
A 		1.7
(-3)
A 		1.7
(-3)
A 		5.2
(-2)
A 		11.9
(-0)
A 		22.3
(3)
P 		21
C 1.2
(-2.6)
A 		1.4
(-2.4)
A 		2.1
(-2.1)
A 		0.4
(-3)
A 		11
(2.8)
A 		11.3
(3)
A 		11
avr 2.7
(-2.6) 		1.7
(-3) 		2.4
(-2.7) 		2.5
(-2.7) 		12.1
(1) 		17.4
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180908_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12946
Sequence Type Exemplar sequence
Representative Public ID T26E4.12 NCBI
Target Description T26E4.12 /REP_DB=WormBase Gene ID /WP=CE16483 /TR=O45838 /GB=CAB03433.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074541(11), NM_074372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074541 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-27) (srd-27) mRNA, complete cds. 11/11 A 
NM_074372 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-28) (srd-28) mRNA, complete cds. 11/11 A 
SNAP00000017600 ENSEMBL cdna:SNAP chromosome:CEL140:V:15805967:15807035:1 11/11 None
GENEFINDER00000017608 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15805967:15807035:1 11/11 None
SNAP00000027837 ENSEMBL cdna:SNAP chromosome:CEL140:V:15253190:15254257:1 11/11 None
GENEFINDER00000027846 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15253190:15254257:1 11/11 None
M01B2.2 ENSEMBL cdna:known chromosome:CEL140:V:15253190:15254257:1 gene:M01B2.2 11/11 A 
T26E4.12 ENSEMBL cdna:known chromosome:CEL140:V:15805967:15807035:1 gene:T26E4.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15805966-15807035(+) 100.0 100.0
chrV:15253189-15254257(+) 96.78 96.78
Public Domain and Genome References
Gene Title

Gene Symbol srd-28
srd-27
Ensembl M01B2.2
T26E4.12
Entrez Gene 187353 Entrez gene
188938 Entrez gene
SwissProt O17956 EMBL-EBI
O45838 EMBL-EBI
WormBase CE16264 Wormbase
CE16483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03433 Hypothetical protein T26E4.12 [Caenorhabditis elegans] ref|NP_506942.1| Serpentine Receptor, class D (delta) family member (srd-27) [Caenorhabditis elegans] 0.0
blast CAB05560 Hypothetical protein M01B2.2 [Caenorhabditis elegans] ref|NP_506773.1| Serpentine Receptor, class D (delta) family member (srd-28) [Caenorhabditis elegans] sp|O17956|SRD28_CAEEL Serpentine receptor class delta-28 (Protein srd-28) 0.0
blast CAB05560 Hypothetical protein M01B2.2 [Caenorhabditis elegans] ref|NP_506773.1| Serpentine Receptor, class D (delta) family member (srd-28) [Caenorhabditis elegans] sp|O17956|SRD28_CAEEL Serpentine receptor class delta-28 (Protein srd-28) 1.0E-178
blast CAB03433 Hypothetical protein T26E4.12 [Caenorhabditis elegans] ref|NP_506942.1| Serpentine Receptor, class D (delta) family member (srd-27) [Caenorhabditis elegans] 1.0E-178
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506942.1 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
NP_506773.1 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
M01B2.2 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
T26E4.12 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
SNAP00000017600 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
GENEFINDER00000017608 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
SNAP00000027837 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
GENEFINDER00000027846 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
Sequence
Target Sequence 
>C. ELEGANS:180908_S_AT
gtgatccttccatcaagagtcttgtctttgttgcaatctgtctctccatcccttccttca
ttcatatggctacttggattagcaactacgacccagctgttgccatcgccatccctgaaa
atgttggaatagaagctagggatatggtacttggaggtaaaatcgtaacatggtcggcac
tcactcttataattcaactcttcatcacctcaatcctagttttgattgcttatgcctgga
tccggaatacacttttaagttttgcagtcaagatgggatctgacaaaaatgatgttaaga
aattgaatacaagacttgtcaaggtgatcaacttccaagtgttcctcccatccttcattt
tcttaggagtattcgtcttcgtcgggatgttcacccaactgattgatccaaagatctccc
agtaccttgtctcagtgtttttcatgttctctcctatctgctccccattctcatacattc
ttttcgtgccccattacctaaatgttatcctcggaaacaagaaagtgtccgaagcaaaaa
gcacaacggaaggatgcacattccgacatgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATCCTTCCATCAAGAGTCTTGT 123 483 359 Antisense
TTGTCTTTGTTGCAATCTGTCTCTC 313 707 380 Antisense
CCCTTCCTTCATTCATATGGCTACT 106 259 408 Antisense
CTACTTGGATTAGCAACTACGACCC 100 223 428 Antisense
TCGGCACTCACTCTTATAATTCAAC 567 605 532 Antisense
TATAATTCAACTCTTCATCACCTCA 209 661 546 Antisense
CTTCATCACCTCAATCCTAGTTTTG 664 221 558 Antisense
TCCTAGTTTTGATTGCTTATGCCTG 205 591 572 Antisense
GCTTATGCCTGGATCCGGAATACAC 574 303 586 Antisense
AGGTGATCAACTTCCAAGTGTTCCT 395 57 680 Antisense
GAAGGATGCACATTCCGACATGTGA 151 335 907 Antisense
Sequence Source Affymetrix Proprietary Database