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[180907_at]

Description T26E4.12 /REP_DB=WormBase Gene ID /WP=CE16483 /TR=O45838 /GB=CAB03433.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 18      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 36.3
(-3)
A 		67.2
(-1.7)
P 		84.9
(-0.9)
P 		177.4
(3)
P 		141
B 46.3
(-2.9)
A 		103.3
(-1.1)
P 		41.6
(-3)
A 		238.6
(3)
P 		197
C 46
(-2.7)
A 		132.8
(-0.6)
A 		34.2
(-3)
A 		283.8
(3)
P 		250
avr 42.9
(-3) 		101.1
(-1.2) 		53.6
(-2.7) 		233.3
(3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 42.8
(-1.6)
A 		58.7
(-0.2)
P 		25.4
(-3)
A 		33.2
(-2.4)
A 		57.3
(-0.4)
P 		97.8
(3)
P 		72
B 42.6
(-2.4)
A 		50.5
(-1.4)
A 		52
(-1.2)
M 		54.6
(-0.9)
A 		38.3
(-3)
A 		84.5
(3)
P 		46
C 47.4
(-1.1)
A 		40.3
(-1.8)
A 		25.7
(-3)
A 		47.6
(-1.1)
M 		42.5
(-1.6)
A 		95.9
(3)
P 		70
avr 44.3
(-2) 		49.8
(-1.4) 		34.4
(-3) 		45.1
(-1.9) 		46
(-1.8) 		92.7
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 13.2
(-3)
A 		14.6
(-2.3)
P 		22.2
(1.2)
P 		26
(3)
P 		13
B 14.8
(-2.2)
A 		25.5
(-0.7)
P 		9.6
(-3)
A 		50.9
(3)
P 		41
C 15.2
(-2.4)
A 		38.2
(1.4)
A 		11.9
(-3)
A 		47.8
(3)
P 		36
avr 14.4
(-3) 		26.1
(-0.4) 		14.6
(-3) 		41.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.9
(-2.2)
A 		20.9
(2)
P 		5.5
(-3)
A 		8.4
(-2)
A 		17.3
(0.9)
P 		23.8
(3)
P 		18
B 14.8
(-2.3)
A 		16.8
(-1.7)
A 		12.6
(-3)
M 		14.5
(-2.4)
A 		15.6
(-2)
A 		31.5
(3)
P 		19
C 17.6
(-0.4)
A 		12.3
(-1.6)
A 		6.5
(-3)
A 		9.6
(-2.3)
M 		13.8
(-1.3)
A 		32.1
(3)
P 		26
avr 13.4
(-1.5) 		16.7
(-0.6) 		8.2
(-3) 		10.8
(-2.3) 		15.6
(-0.9) 		29.1
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12946
Sequence Type Exemplar sequence
Representative Public ID T26E4.12 NCBI
Target Description T26E4.12 /REP_DB=WormBase Gene ID /WP=CE16483 /TR=O45838 /GB=CAB03433.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074541 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-27) (srd-27) mRNA, complete cds. 11/11 A 
SNAP00000017600 ENSEMBL cdna:SNAP chromosome:CEL140:V:15805967:15807035:1 11/11 None
GENEFINDER00000017608 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15805967:15807035:1 11/11 None
T26E4.12 ENSEMBL cdna:known chromosome:CEL140:V:15805967:15807035:1 gene:T26E4.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15805966-15807035(+) 100.0 100.0
chrV:15253189-15254257(+) 96.78 96.78
Public Domain and Genome References
Gene Title
Gene Symbol srd-27
Ensembl T26E4.12
Entrez Gene 188938 Entrez gene
SwissProt O45838 EMBL-EBI
WormBase CE16483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03433 Hypothetical protein T26E4.12 [Caenorhabditis elegans] ref|NP_506942.1| Serpentine Receptor, class D (delta) family member (srd-27) [Caenorhabditis elegans] 0.0
blast CAB05560 Hypothetical protein M01B2.2 [Caenorhabditis elegans] ref|NP_506773.1| Serpentine Receptor, class D (delta) family member (srd-28) [Caenorhabditis elegans] sp|O17956|SRD28_CAEEL Serpentine receptor class delta-28 (Protein srd-28) 1.0E-178
blast CAB03275 Hypothetical protein T02B5.4 [Caenorhabditis elegans] ref|NP_506505.1| Serpentine Receptor, class D (delta) family member (srd-26) [Caenorhabditis elegans] sp|P92015|SRD26_CAEEL Serpentine receptor class delta-26 (Protein srd-26) 1.0E-138
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506942.1 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
T26E4.12 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
SNAP00000017600 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
GENEFINDER00000017608 7 5-27,34-56,86-108,120-142,174-196,224-246,256-278
Sequence
Target Sequence 
>C. ELEGANS:180907_AT
agaagctagggatatggtacttggaggtaaaatcgtaacatggtcggcactcactcttat
aattcaactcttcatcacctcaatcctagttttgattgcttatgcctggatccggaatac
acttttaagttttgcagtcaagatgggatctgacaaaaatgatgttaagaaattgaatac
aagacttgtcaaggtgatcaacttccaagtgttcctcccatccttcattttcttaggagt
attcgtcttcgtcgggatgttcacccaactgattgatccaaagatctcccagtaccttgt
ctcagtgtttttcatgttctctcctatctgctccccattctcatacattcttttcgtgcc
ccattacctaaatgttatcctcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCTAGGGATATGGTACTTGGA 652 71 489 Antisense
TAAAATCGTAACATGGTCGGCACTC 351 635 516 Antisense
CTTCATTTTCTTAGGAGTATTCGTC 411 221 711 Antisense
TAGGAGTATTCGTCTTCGTCGGGAT 420 653 722 Antisense
TATTCGTCTTCGTCGGGATGTTCAC 656 661 728 Antisense
CTTCGTCGGGATGTTCACCCAACTG 613 213 735 Antisense
ACTGATTGATCCAAAGATCTCCCAG 229 97 756 Antisense
ATCCAAAGATCTCCCAGTACCTTGT 317 39 764 Antisense
AGTACCTTGTCTCAGTGTTTTTCAT 186 59 779 Antisense
TTTCGTGCCCCATTACCTAAATGTT 310 671 840 Antisense
CCATTACCTAAATGTTATCCTCGGA 600 269 849 Antisense
Sequence Source Affymetrix Proprietary Database