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[180905_at]

Description K02E11.5 /REP_DB=WormBase Gene ID /WP=CE11652 /TR=Q21144 /GB=CAB01222.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 42      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 29      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 430
1 2 3 4 range
A 764.9
(2.3)
P 		708.7
(0.8)
P 		569.4
(-3)
P 		791.8
(3)
P 		222
B 723.2
(1.4)
P 		609.2
(-0.8)
P 		496.1
(-3)
P 		802.9
(3)
P 		307
C 926.4
(3)
P 		770.4
(0.1)
P 		600.4
(-3)
P 		654.3
(-2)
P 		326
avr 804.8
(3) 		696.1
(0.4) 		555.3
(-3) 		749.7
(1.7) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 521
1 2 3 4 5 6 range
A 202.9
(-2.1)
P 		371
(-0.2)
P 		643.2
(3)
P 		387.6
(0)
P 		238.1
(-1.7)
P 		127.6
(-3)
P 		516
B 237.9
(-1.4)
P 		496.6
(2)
P 		569.5
(3)
P 		359.4
(0.2)
P 		252.4
(-1.3)
P 		121.9
(-3)
P 		448
C 186.8
(-3)
P 		441.6
(3)
P 		332.4
(0.4)
P 		440.1
(3)
P 		226.1
(-2.1)
P 		248.8
(-1.5)
P 		255
avr 209.2
(-2.3) 		436.4
(1.6) 		515
(3) 		395.7
(0.9) 		238.9
(-1.7) 		166.1
(-3) 		349
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 278.5
(3)
P 		153.8
(-1.6)
P 		148.8
(-1.8)
P 		115.9
(-3)
P 		163
B 230.6
(3)
P 		150.5
(-1.2)
P 		115
(-3)
P 		171.1
(-0.1)
P 		116
C 306.7
(3)
P 		221.5
(0.4)
P 		209.2
(0)
P 		110.3
(-3)
P 		196
avr 271.9
(3) 		175.3
(-1.2) 		157.7
(-1.9) 		132.4
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 37.4
(-2.7)
P 		131.9
(2.5)
P 		140.1
(3)
P 		98.3
(0.7)
P 		71.9
(-0.8)
P 		31.1
(-3)
P 		109
B 82.8
(-1.1)
P 		165.3
(3)
P 		138.3
(1.6)
P 		95.2
(-0.5)
P 		102.6
(-0.1)
P 		45.5
(-3)
P 		120
C 69.2
(-3)
P 		134.8
(3)
P 		84.6
(-1.6)
P 		88.5
(-1.2)
P 		73.2
(-2.6)
P 		83.3
(-1.7)
P 		66
avr 63.1
(-2.4) 		144
(3) 		121
(1.5) 		94
(-0.3) 		82.6
(-1.1) 		53.3
(-3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180905_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14008
Sequence Type Exemplar sequence
Representative Public ID K02E11.5 NCBI
Target Description K02E11.5 /REP_DB=WormBase Gene ID /WP=CE11652 /TR=Q21144 /GB=CAB01222.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074125 NCBI Caenorhabditis elegans K02E11.5 (K02E11.5) mRNA, complete cds. 11/11 None
SNAP00000039264 ENSEMBL cdna:SNAP chromosome:CEL140:V:14254969:14255820:1 11/11 None
GENEFINDER00000039268 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14254969:14255816:1 11/11 None
K02E11.5 ENSEMBL cdna:known chromosome:CEL140:V:14254969:14255820:1 gene:K02E11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14254968-14255820(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E11.5
Entrez Gene 186896 Entrez gene
SwissProt Q21144 EMBL-EBI
WormBase CE11652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01222 Hypothetical protein K02E11.5 [Caenorhabditis elegans] ref|NP_506526.1| K02E11.5 [Caenorhabditis elegans] 9.0E-61
blast CAB01222 Hypothetical protein K02E11.5 [Caenorhabditis elegans] ref|NP_506526.1| K02E11.5 [Caenorhabditis elegans] 2.0E-59
blast CAE17861 Hypothetical protein K02E11.9 [Caenorhabditis elegans] ref|NP_001024026.1| K02E11.9 [Caenorhabditis elegans] 5.0E-49
blast CAE17861 Hypothetical protein K02E11.9 [Caenorhabditis elegans] ref|NP_001024026.1| K02E11.9 [Caenorhabditis elegans] 5.0E-48
blast CAB01221 Hypothetical protein K02E11.6 [Caenorhabditis elegans] ref|NP_506525.2| K02E11.6 [Caenorhabditis elegans] 3.0E-44
Sequence
Target Sequence 
>C. ELEGANS:180905_AT
gtctgctagcattattttgtctttgtgcagttgtcaccgatgctcaaatgctcggaggac
agatttatgcgaaaataaacgcaacggtatcaatttcattaccacaagttgctaattatc
gccgcgaaattcaaaatgaaaaagatgtttgggaggaacatatctacagagtttgcaacg
ggaagaataagaaaacttgtggatattgggagaatgttaagaccaaaaagaagattccat
cgggacccacaaactacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGCTAGCATTATTTTGTCTTTG 573 471 26 Antisense
TTATTTTGTCTTTGTGCAGTTGTCA 638 677 37 Antisense
GATGCTCAAATGCTCGGAGGACAGA 461 413 64 Antisense
AATGCTCGGAGGACAGATTTATGCG 388 165 72 Antisense
TAAACGCAACGGTATCAATTTCATT 343 641 101 Antisense
GCAACGGTATCAATTTCATTACCAC 49 321 106 Antisense
CCACAAGTTGCTAATTATCGCCGCG 683 275 127 Antisense
AGTTGCTAATTATCGCCGCGAAATT 685 63 132 Antisense
GGAACATATCTACAGAGTTTGCAAC 538 529 180 Antisense
GATTCCATCGGGACCCACAAACTAC 426 433 258 Antisense
TCCATCGGGACCCACAAACTACAAC 365 585 261 Antisense
Sequence Source Affymetrix Proprietary Database