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[180904_at]

Description R04B5.10 /REP_DB=WormBase Gene ID /WP=CE06220 /TR=Q21707 /GB=CAA94846.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 1.8
(-2)
A 		1.5
(-2.8)
A 		1.4
(-3)
A 		3.8
(3)
A 		2
B 23.3
(3)
A 		17.3
(1.4)
A 		1
(-3)
A 		6.6
(-1.5)
A 		22
C 9.6
(-2.1)
A 		4
(-3)
A 		10
(-2.1)
A 		42
(3)
P 		38
avr 11.6
(0.4) 		7.6
(-1.4) 		4.1
(-3) 		17.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.6
(0.4)
A 		0.7
(-3)
A 		9.3
(-0.1)
A 		9.2
(-0.1)
A 		18.4
(3)
A 		1.8
(-2.6)
A 		18
B 1.1
(-2.8)
A 		3
(-1.6)
A 		10.9
(3)
A 		2.8
(-1.8)
A 		1.9
(-2.3)
A 		0.7
(-3)
A 		10
C 18
(3)
A 		17.7
(2.9)
A 		4.2
(-1.8)
A 		1.9
(-2.6)
A 		0.8
(-3)
A 		1.5
(-2.8)
A 		17
avr 9.9
(3) 		7.1
(1) 		8.1
(1.7) 		4.6
(-0.7) 		7
(1) 		1.3
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(3)
A 		0.3
(-3)
A 		0.4
(-1)
A 		0.6
(3)
A 		0
B 7.4
(3)
A 		4.3
(0.4)
A 		0.2
(-3)
A 		1.4
(-2)
A 		7
C 3.2
(-1)
A 		1.2
(-3)
A 		3.5
(-0.7)
A 		7.1
(3)
P 		6
avr 3.7
(3) 		1.9
(-1.7) 		1.4
(-3) 		3
(1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.9
(-1.1)
A 		0.2
(-3)
A 		2
(-1)
A 		2.3
(-0.7)
A 		5.6
(3)
A 		0.4
(-2.8)
A 		5
B 0.4
(-2.8)
A 		1
(-1.3)
A 		2.7
(3)
A 		0.8
(-1.8)
A 		0.8
(-1.8)
A 		0.3
(-3)
A 		2
C 6.7
(3)
A 		5.4
(1.8)
A 		1.1
(-2.3)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		6
avr 3
(3) 		2.2
(1.2) 		1.9
(0.5) 		1.2
(-1.2) 		2.2
(1.2) 		0.4
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11916
Sequence Type Exemplar sequence
Representative Public ID R04B5.10 NCBI
Target Description R04B5.10 /REP_DB=WormBase Gene ID /WP=CE06220 /TR=Q21707 /GB=CAA94846.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R04B5.10 ENSEMBL cdna:pseudogene chromosome:CEL140:V:10101485:10101786:-1 gene:R04B5.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020550 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10101484-10101786(-) 99.6 100.0
Public Domain and Genome References
Ensembl R04B5.10
Sequence
Target Sequence 
>C. ELEGANS:180904_AT
atgaatttgtctattgtttctcaatgtgccaacgacattcaaatgaaaagtaaaatatca
tttttgtatcggtccaatgcttacatgaataatgtttttacaattgtcacgtggatttta
accgctatggcattgaaacaattatgtaaaagagcaatatttccaaaatctacacatgtt
ctgatgattctcagtttgattgttaccagcatacatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATTTGTCTATTGTTTCTCAAT 147 45 13 Antisense
ATTGTTTCTCAATGTGCCAACGACA 537 3 25 Antisense
AATATCATTTTTGTATCGGTCCAAT 30 175 66 Antisense
CGGTCCAATGCTTACATGAATAATG 161 245 82 Antisense
ATGTTTTTACAATTGTCACGTGGAT 173 47 104 Antisense
CACGTGGATTTTAACCGCTATGGCA 518 197 120 Antisense
TAACCGCTATGGCATTGAAACAATT 703 609 131 Antisense
TTTCCAAAATCTACACATGTTCTGA 525 669 172 Antisense
CATGTTCTGATGATTCTCAGTTTGA 148 211 187 Antisense
GATTCTCAGTTTGATTGTTACCAGC 22 433 198 Antisense
GTTTGATTGTTACCAGCATACATGA 378 451 206 Antisense
Sequence Source Affymetrix Proprietary Database