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[180901_at]

Description F41C3.4 /REP_DB=WormBase Gene ID /WP=CE02732 /TR=Q20263 /GB=AAC46811.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_highest_nonorm > 72      6grp_total > 53      4grp_total > 33      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 291.5
(-3)
P 		420.6
(1.2)
P 		371.9
(-0.4)
P 		477.9
(3)
P 		186
B 277.3
(-3)
P 		492.5
(2.4)
P 		444.3
(1.2)
P 		517.3
(3)
P 		240
C 319.9
(-3)
P 		550.4
(3)
P 		425.7
(-0.2)
P 		537.5
(2.7)
P 		231
avr 296.2
(-3) 		487.8
(2.4) 		414
(0.3) 		510.9
(3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 308.6
(-2.8)
P 		382
(-0.5)
P 		490.9
(3)
P 		371
(-0.8)
P 		338.9
(-1.8)
P 		301.8
(-3)
P 		189
B 273
(-3)
P 		345.5
(-1.2)
P 		513.1
(3)
P 		357.9
(-0.9)
P 		335.9
(-1.4)
P 		343.9
(-1.2)
P 		240
C 455.6
(3)
P 		311
(-3)
P 		362.2
(-0.9)
P 		419.5
(1.5)
P 		330.7
(-2.2)
P 		378.8
(-0.2)
P 		145
avr 345.7
(-2.5) 		346.2
(-2.5) 		455.4
(3) 		382.8
(-0.6) 		335.2
(-3) 		341.5
(-2.7) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 106.1
(3)
P 		91.3
(0.5)
P 		97.2
(1.5)
P 		70
(-3)
P 		36
B 88.4
(-3)
P 		121.6
(3)
P 		103
(-0.4)
P 		110.2
(0.9)
P 		33
C 105.9
(-1.6)
P 		158.2
(3)
P 		148.4
(2.1)
P 		90.6
(-3)
P 		68
avr 100.1
(-1.2) 		123.7
(3) 		116.2
(1.7) 		90.3
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 56.9
(-3)
P 		135.9
(3)
P 		106.9
(0.8)
P 		94.1
(-0.2)
P 		102.3
(0.4)
P 		73.5
(-1.7)
P 		79
B 95
(-3)
P 		115
(-0.1)
P 		124.6
(1.3)
P 		94.8
(-3)
P 		136.5
(3)
P 		128.3
(1.8)
P 		42
C 168.9
(3)
P 		94.9
(-2.3)
P 		92.2
(-2.4)
P 		84.4
(-3)
P 		107
(-1.4)
P 		126.8
(0)
P 		85
avr 106.9
(0.9) 		115.3
(3) 		107.9
(1.2) 		91.1
(-3) 		115.3
(3) 		109.5
(1.6) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4601
Sequence Type Exemplar sequence
Representative Public ID F41C3.4 NCBI
Target Description F41C3.4 /REP_DB=WormBase Gene ID /WP=CE02732 /TR=Q20263 /GB=AAC46811.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062446 NCBI Caenorhabditis elegans F41C3.4 (F41C3.4) mRNA, complete cds. 11/11 None
SNAP00000035621 ENSEMBL cdna:SNAP chromosome:CEL140:II:4740433:4741197:1 11/11 None
GENEFINDER00000035628 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4740433:4741197:1 11/11 None
F41C3.4 ENSEMBL cdna:known chromosome:CEL140:II:4740567:4741555:1 gene:F41C3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4740565-4741196(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41C3.4
Entrez Gene 173819 Entrez gene
SwissProt Q20263 EMBL-EBI
WormBase CE02732 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258866_AT Got1-like family protein at
CANINE_2:CFAAFFX.19038.1.S1_S_AT similar to UPF0198 protein CGI-141 cfa
DROSOPHILA_2:1628409_AT dm
CHICKEN:GGA.2570.1.S1_AT golgi transport 1 homolog B (S. cerevisiae) gga
HG-U133B:222552_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U133_PLUS_2:222552_AT golgi transport 1 homolog B (S. cerevisiae) hs
HU35KSUBA:RC_AA039758_AT golgi transport 1 homolog B (S. cerevisiae) hs
HU35KSUBC:RC_N33481_AT golgi transport 1 homolog B (S. cerevisiae) hs
HU35KSUBC:RC_AA256486_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U133A:218193_S_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U133_PLUS_2:218193_S_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U133A_2:218193_S_AT golgi transport 1 homolog B (S. cerevisiae) hs
U133_X3P:G7705635_3P_A_AT golgi transport 1 homolog B (S. cerevisiae) hs
U133_X3P:G7018429_3P_X_AT golgi transport 1 homolog B (S. cerevisiae) hs
U133_X3P:G7018429_3P_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U95B:48368_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U95C:56591_AT golgi transport 1 homolog B (S. cerevisiae) hs
HG-U95C:64490_AT golgi transport 1 homolog B (S. cerevisiae) hs
MOUSE430A_2:1449859_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOE430A:1449859_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOUSE430_2:1449859_AT golgi transport 1 homolog B (S. cerevisiae) mm
MU11KSUBA:AA407875_S_AT golgi transport 1 homolog B (S. cerevisiae) mm
MG-U74AV2:92279_AT golgi transport 1 homolog B (S. cerevisiae) mm
MG-U74BV2:107906_AT golgi transport 1 homolog B (S. cerevisiae) mm
MG-U74CV2:166458_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOE430A:1460583_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOUSE430A_2:1460583_AT golgi transport 1 homolog B (S. cerevisiae) mm
MOUSE430_2:1460583_AT golgi transport 1 homolog B (S. cerevisiae) mm
MU19KSUBA:TC19601_AT Golgi transport 1 homolog B (S. cerevisiae) (Golt1b), mRNA mm
MU19KSUBB:TC34226_AT Golgi transport 1 homolog B (S. cerevisiae) (Golt1b), mRNA mm
RG-U34C:RC_AI070880_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RG-U34C:RC_AI179974_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RAE230A:1389077_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RAT230_2:1389077_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RAE230B:1383543_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
RAT230_2:1383543_AT similar to CGI-141 protein; EST AA407874 (predicted) rn
YEAST_2:1777368_AT Evolutionarily conserved non-essential protein present in early Golgi cisternae that may be involved in ER-Golgi transport at a step after vesicle tethering to Golgi membranes, exhibits membrane topology similar to that of Sft2p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16192 vesicle-mediated transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46811 Hypothetical protein F41C3.4 [Caenorhabditis elegans] ref|NP_494847.1| F41C3.4 [Caenorhabditis elegans] sp|Q20263|YUW4_CAEEL Hypothetical UPF0198 protein F41C3.4 in chromosome II 6.0E-58
blast CAE73221 Hypothetical protein CBG20627 [Caenorhabditis briggsae] 2.0E-57
blast AAC46811 Hypothetical protein F41C3.4 [Caenorhabditis elegans] ref|NP_494847.1| F41C3.4 [Caenorhabditis elegans] sp|Q20263|YUW4_CAEEL Hypothetical UPF0198 protein F41C3.4 in chromosome II 3.0E-56
blast CAE73221 Hypothetical protein CBG20627 [Caenorhabditis briggsae] 7.0E-56
blast XP_396259 PREDICTED: similar to ENSANGP00000015000 [Apis mellifera] 7.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR007305 EMBL-EBI Got1-like protein 4.4E-65
Pfam IPR007305 EMBL-EBI Got1-like protein 4.4E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494847.1 3 6-25,38-60,65-82
F41C3.4 3 6-25,38-60,65-82
SNAP00000035621 4 12-31,35-54,67-89,94-111
GENEFINDER00000035628 4 12-31,35-54,67-89,94-111
Sequence
Target Sequence 
>C. ELEGANS:180901_AT
gttccttgattctgctcttttagctatcggaaatcttctattcattgttggaatcacatt
tattatcggcgtgcagcgaacacttgttttcttcttcgaattccgaaaactgaaaggaag
cattctcttcttcggagggattttggtagttctatttgggtacccattgttcggaatgat
tgccgagtgttggggatttattgtccttttcggtggtttcctgcctggaattgtcaattt
gctcagaagtatccccggaatctcaacaatcacatatcttcctggaatccgacaggtcct
cga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCTTGATTCTGCTCTTTTAGCT 531 441 15 Antisense
ATCGGCGTGCAGCGAACACTTGTTT 524 33 79 Antisense
CACTTGTTTTCTTCTTCGAATTCCG 208 197 95 Antisense
AAGCATTCTCTTCTTCGGAGGGATT 482 151 132 Antisense
ATTTGGGTACCCATTGTTCGGAATG 488 1 168 Antisense
TGGGGATTTATTGTCCTTTTCGGTG 406 497 205 Antisense
GTGGTTTCCTGCCTGGAATTGTCAA 184 489 227 Antisense
GTCAATTTGCTCAGAAGTATCCCCG 241 463 247 Antisense
AAGTATCCCCGGAATCTCAACAATC 312 155 261 Antisense
CTCAACAATCACATATCTTCCTGGA 603 227 276 Antisense
TTCCTGGAATCCGACAGGTCCTCGA 510 697 293 Antisense
Sequence Source Affymetrix Proprietary Database