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[180900_at]

Description F52C6.6 /REP_DB=WormBase Gene ID /WP=CE17097 /TR=O44813 /GB=AAB94980.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 6.1
(-3)
A 		13.9
(-1.8)
A 		6.2
(-3)
A 		45
(3)
A 		39
B 8.1
(-1.7)
A 		19.8
(1.3)
A 		2.9
(-3)
A 		26.7
(3)
A 		24
C 21.1
(-1)
A 		5.9
(-2.7)
A 		2.7
(-3)
A 		57.6
(3)
A 		55
avr 11.8
(-1.8) 		13.2
(-1.6) 		3.9
(-3) 		43.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 4.8
(-2.7)
A 		4
(-2.8)
A 		18.3
(-0.6)
A 		2.9
(-3)
A 		42
(3)
A 		23.8
(0.2)
A 		39
B 8.9
(-1.7)
A 		15.4
(0.1)
A 		13.3
(-0.5)
A 		10.5
(-1.3)
A 		4.2
(-3)
A 		25.8
(3)
A 		22
C 3.6
(-2.2)
A 		3
(-2.5)
A 		8.4
(0.9)
A 		11.6
(3)
A 		2.3
(-3)
A 		6.3
(-0.4)
A 		9
avr 5.8
(-3) 		7.5
(-2.2) 		13.3
(0.5) 		8.3
(-1.8) 		16.2
(1.9) 		18.6
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.2
(-2.3)
A 		3
(-1.3)
A 		1.6
(-3)
A 		6.6
(3)
A 		5
B 2.6
(-0.7)
A 		4.9
(2)
A 		0.7
(-3)
A 		5.7
(3)
A 		5
C 7
(1.2)
A 		1.7
(-2.5)
A 		0.9
(-3)
A 		9.7
(3)
A 		9
avr 3.9
(-0.3) 		3.2
(-1) 		1.1
(-3) 		7.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		1.4
(-2.7)
A 		4
(-1.4)
A 		0.7
(-3)
A 		12.7
(3)
A 		5.8
(-0.5)
A 		12
B 3.1
(-1.9)
A 		5.1
(-0.4)
A 		3.2
(-1.9)
A 		2.8
(-2.2)
A 		1.7
(-3)
A 		9.6
(3)
A 		8
C 1.3
(-0.8)
A 		0.9
(-2.3)
A 		2.1
(2.3)
A 		2.3
(3)
A 		0.7
(-3)
A 		2.1
(2.3)
A 		2
avr 1.8
(-3) 		2.5
(-2) 		3.1
(-1.1) 		1.9
(-2.9) 		5
(1.8) 		5.8
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180900_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4894
Sequence Type Exemplar sequence
Representative Public ID F52C6.6 NCBI
Target Description F52C6.6 /REP_DB=WormBase Gene ID /WP=CE17097 /TR=O44813 /GB=AAB94980.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061719 NCBI Caenorhabditis elegans F52C6.6 (F52C6.6) mRNA, complete cds. 11/11 None
SNAP00000005719 ENSEMBL cdna:SNAP chromosome:CEL140:II:1912472:1912837:-1 11/11 None
F52C6.6 ENSEMBL cdna:known chromosome:CEL140:II:1912472:1912837:-1 gene:F52C6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1912470-1912836(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C6.6
Entrez Gene 186088 Entrez gene
SwissProt O44813 EMBL-EBI
WormBase CE17097 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94980 Hypothetical protein F52C6.6 [Caenorhabditis elegans] ref|NP_494120.1| F52C6.6 [Caenorhabditis elegans] 1.0E-56
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 2.0E-20
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.9E-22
Sequence
Target Sequence 
>C. ELEGANS:180900_AT
gttcttctcagtcccatcgaagagcattttaatattccatggcaaattagaattagccgc
caagaaggacacatgggtgcacatattctctgtctgaagacaaaggataacaatgcaccc
tgggaagttaactccgaagcccagttgaaactcgtcacttcatctggaaaaagtaccaca
tttgacggcattaaactttggtcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCTCAGTCCCATCGAAGAGC 460 443 79 Antisense
GGCAAATTAGAATTAGCCGCCAAGA 156 535 119 Antisense
GCCGCCAAGAAGGACACATGGGTGC 75 285 134 Antisense
ACATGGGTGCACATATTCTCTGTCT 421 107 149 Antisense
GCACATATTCTCTGTCTGAAGACAA 439 317 157 Antisense
GGATAACAATGCACCCTGGGAAGTT 709 509 183 Antisense
GCACCCTGGGAAGTTAACTCCGAAG 516 291 193 Antisense
AACTCCGAAGCCCAGTTGAAACTCG 86 109 208 Antisense
CCAGTTGAAACTCGTCACTTCATCT 614 271 219 Antisense
AAAGTACCACATTTGACGGCATTAA 214 123 248 Antisense
TTGACGGCATTAAACTTTGGTCAGA 555 701 260 Antisense
Sequence Source Affymetrix Proprietary Database