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[180899_at]

Description F23H12.7 /REP_DB=WormBase Gene ID /WP=CE05710 /TR=Q19765 /GB=CAA98944.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 117.2
(0.5)
P 		43.3
(-2.9)
A 		40.5
(-3)
A 		173.5
(3)
P 		133
B 171.9
(3)
P 		76.2
(-2.6)
A 		69.4
(-3)
A 		105.1
(-0.9)
P 		103
C 106.4
(1.3)
P 		71.9
(-1.3)
A 		49.7
(-3)
A 		129.1
(3)
P 		79
avr 131.8
(2.7) 		63.8
(-2.2) 		53.2
(-3) 		135.9
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 91.6
(3)
P 		70.7
(1.5)
A 		48.9
(-0.1)
A 		9.7
(-3)
A 		41.3
(-0.7)
A 		56.2
(0.4)
A 		82
B 104
(3)
P 		87.5
(1.6)
P 		34.3
(-3)
A 		57.3
(-1)
A 		69.3
(0)
A 		71.2
(0.2)
A 		70
C 48.5
(-0.4)
P 		100.4
(3)
P 		9.3
(-3)
A 		49.5
(-0.4)
A 		40.1
(-1)
A 		50.4
(-0.3)
A 		91
avr 81.4
(2.5) 		86.2
(3) 		30.8
(-3) 		38.8
(-2.1) 		50.2
(-0.9) 		59.3
(0.1) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 42.7
(3)
P 		9.4
(-3)
A 		10.6
(-2.8)
A 		25.4
(-0.1)
P 		33
B 54.8
(3)
P 		18.8
(-2.6)
A 		16.1
(-3)
A 		22.4
(-2)
P 		39
C 35.2
(3)
P 		20.7
(-1.9)
A 		17.3
(-3)
A 		21.8
(-1.5)
P 		18
avr 44.2
(3) 		16.3
(-2.7) 		14.7
(-3) 		23.2
(-1.3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 16.9
(0.8)
P 		25.2
(3)
A 		10.7
(-0.8)
A 		2.5
(-3)
A 		12.5
(-0.4)
A 		13.7
(-0)
A 		23
B 36.2
(3)
P 		29.1
(1.5)
P 		8.3
(-3)
A 		15.2
(-1.5)
A 		28.1
(1.3)
A 		26.5
(0.9)
A 		28
C 18
(0.3)
P 		30.6
(3)
P 		2.4
(-3)
A 		10
(-1.4)
A 		13
(-0.7)
A 		16.9
(0.1)
A 		28
avr 23.7
(1.7) 		28.3
(3) 		7.1
(-3) 		9.2
(-2.4) 		17.9
(0.1) 		19
(0.4) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14283
Sequence Type Exemplar sequence
Representative Public ID F23H12.7 NCBI
Target Description F23H12.7 /REP_DB=WormBase Gene ID /WP=CE05710 /TR=Q19765 /GB=CAA98944.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073697(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073697 NCBI Caenorhabditis elegans F23H12.7 (F23H12.7) mRNA, complete cds. 11/11 None
SNAP00000020017 ENSEMBL cdna:SNAP chromosome:CEL140:V:12374318:12375458:1 11/11 None
GENEFINDER00000020026 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12374318:12375458:1 11/11 None
F23H12.7 ENSEMBL cdna:known chromosome:CEL140:V:12374318:12375458:1 gene:F23H12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12374317-12375458(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23H12.7
Entrez Gene 184912 Entrez gene
SwissProt Q19765 EMBL-EBI
WormBase CE05710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98944 Hypothetical protein F23H12.7 [Caenorhabditis elegans] ref|NP_506098.1| F23H12.7 [Caenorhabditis elegans] 3.0E-92
blast CAE75468 Hypothetical protein CBG23468 [Caenorhabditis briggsae] 1.0E-89
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506098.1 4 7-29,70-89,96-118,133-155
F23H12.7 4 7-29,70-89,96-118,133-155
SNAP00000020017 4 7-29,70-89,96-118,133-155
GENEFINDER00000020026 4 7-29,70-89,96-118,133-155
Sequence
Target Sequence 
>C. ELEGANS:180899_AT
caggcttcaagcaccctttaatgacatgccagtcattcaatgtttcaattcttgaacgtt
ataatgagcctacagtactttctcaacataaaatatgcacaaccaatggtccccttgttt
tctggattattattcaccttttcactgatctaatggcactgatctcaatctacacaaaaa
atacaaaacttcttcttggcttcctggttgtgacgtccatggatctactcgtatcacttg
cttatgtcgttgtactgcttgctttcattgtactcaatgaacagattgacaaagttatga
taatgttcatgggtggaatggtcctcttcaaaatttacgagattcttactggacggcgtc
tttattggtatcttctctggcttcaagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGCTTCAAGCACCCTTTAATGAC 436 207 110 Antisense
AGCCTACAGTACTTTCTCAACATAA 474 81 176 Antisense
TATGCACAACCAATGGTCCCCTTGT 374 657 203 Antisense
TATTCACCTTTTCACTGATCTAATG 127 663 240 Antisense
TACAAAACTTCTTCTTGGCTTCCTG 495 641 291 Antisense
GTGACGTCCATGGATCTACTCGTAT 42 483 319 Antisense
TACTCGTATCACTTGCTTATGTCGT 308 647 335 Antisense
TTATGTCGTTGTACTGCTTGCTTTC 475 681 351 Antisense
ACGAGATTCTTACTGGACGGCGTCT 647 93 446 Antisense
GGACGGCGTCTTTATTGGTATCTTC 241 525 460 Antisense
TGGTATCTTCTCTGGCTTCAAGACA 582 551 475 Antisense
Sequence Source Affymetrix Proprietary Database