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[180898_at]

Description Y37A1B.8 /REP_DB=WormBase Gene ID /WP=CE19078 /TR=Q9XXF8 /GB=CAA19491.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 11.1
(-2)
A 		7.2
(-2.5)
A 		3.7
(-3)
A 		46.6
(3)
A 		43
B 36.5
(3)
P 		23.9
(-0.5)
A 		27.1
(0.4)
A 		15
(-3)
A 		22
C 24.6
(-0.5)
P 		8.7
(-2.7)
A 		6.5
(-3)
A 		49.4
(3)
P 		43
avr 24.1
(-0.1) 		13.3
(-2.8) 		12.4
(-3) 		37
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 22.7
(2.2)
A 		4.3
(-2.3)
A 		26
(3)
A 		1.5
(-3)
A 		5.7
(-2)
A 		3.1
(-2.6)
A 		25
B 15.2
(2.1)
A 		16.5
(2.7)
P 		9.3
(-0.5)
A 		3.8
(-3)
A 		17.1
(3)
A 		6.8
(-1.6)
A 		13
C 8.5
(-1.5)
A 		26.5
(2)
P 		31.4
(3)
A 		29.1
(2.5)
A 		0.9
(-3)
A 		1.5
(-2.9)
A 		31
avr 15.5
(0.8) 		15.8
(0.9) 		22.2
(3) 		11.5
(-0.5) 		7.9
(-1.7) 		3.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4
(0.1)
A 		1.6
(-2.4)
A 		1
(-3)
A 		6.8
(3)
A 		6
B 11.6
(3)
P 		5.9
(-1.1)
A 		6.3
(-0.8)
A 		3.2
(-3)
A 		8
C 8.1
(2.8)
P 		2.5
(-2.8)
A 		2.3
(-3)
A 		8.3
(3)
P 		6
avr 7.9
(3) 		3.3
(-2.9) 		3.2
(-3) 		6.1
(0.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.2
(1.3)
A 		1.5
(-1.8)
A 		5.7
(3)
A 		0.4
(-3)
A 		1.7
(-1.5)
A 		0.8
(-2.5)
A 		5
B 5.3
(1.3)
A 		5.5
(1.5)
P 		2.3
(-1.7)
A 		1
(-3)
A 		7
(3)
A 		2.6
(-1.4)
A 		6
C 3.2
(-0.8)
A 		8.1
(3)
P 		8
(2.9)
A 		5.9
(1.3)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		8
avr 4.2
(1.4) 		5
(2.6) 		5.3
(3) 		2.4
(-1.4) 		3
(-0.5) 		1.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180898_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8448
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.8 NCBI
Target Description Y37A1B.8 /REP_DB=WormBase Gene ID /WP=CE19078 /TR=Q9XXF8 /GB=CAA19491.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070287 NCBI Caenorhabditis elegans Y37A1B.8 (Y37A1B.8) mRNA, complete cds. 11/11 None
GENEFINDER00000004235 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14020167:14024665:1 11/11 None
Y37A1B.8 ENSEMBL cdna:known chromosome:CEL140:IV:14020167:14024597:1 gene:Y37A1B.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004223 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14020172-14024603(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37A1B.8
Entrez Gene 189602 Entrez gene
SwissProt Q9XXF8 EMBL-EBI
WormBase CE19078 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19491 Hypothetical protein Y37A1B.8 [Caenorhabditis elegans] ref|NP_502688.1| Y37A1B.8 [Caenorhabditis elegans] 0.0
blast CAA90668 Hypothetical protein T05A6.4 [Caenorhabditis elegans] ref|NP_495643.1| T05A6.4 [Caenorhabditis elegans] 1.0E-169
blast CAA90668 Hypothetical protein T05A6.4 [Caenorhabditis elegans] ref|NP_495643.1| T05A6.4 [Caenorhabditis elegans] 1.0E-167
blast CAB07233 Hypothetical protein H25K10.6 [Caenorhabditis elegans] ref|NP_502925.1| H25K10.6 [Caenorhabditis elegans] 2.0E-92
blast AAF39998 Hypothetical protein ZK355.1 [Caenorhabditis elegans] ref|NP_494403.1| ZK355.1 [Caenorhabditis elegans] 9.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-27
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.2E-28
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-27
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.2E-28
Sequence
Target Sequence 
>C. ELEGANS:180898_AT
aaagatttggactgccagcattgaagagaattgaatcttcatattttcatccggttattg
tcaacttggaaaatttacatccagacttttgtctaactttcgaggaaattatgtttttcc
tagtcaaatatatatcatttttgaatatccatgctaatatctgcaacaccaagtttattc
caaagctattcgatattttttgtaattcaacaaaacttgaagctttgcaagaggattgta
ccattatttatggaaatattttaatagaaaatggtgatgaaaagtatgtgaataagcttt
ctctagttagatatttattcggatcgttgataattcgaaatacaacattggagaatctga
atttcctcaaatatttgaattatattgcattatttgatgatgaatatgttattcaaattt
tatctaataagaatcttacaagtgtcaatttaccaggtataatgaacataatatcaaaat
caaatcgtactattgttgtgcatggtaatccattactacccagtccaagacgttttccgt
ttcgagttacatacgccacaaatgctgcattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGATTTGGACTGCCAGCATTGAA 30 123 842 Antisense
ATCTTCATATTTTCATCCGGTTATT 516 31 876 Antisense
TCATCCGGTTATTGTCAACTTGGAA 704 621 888 Antisense
AAAATTTACATCCAGACTTTTGTCT 480 133 911 Antisense
GAATATCCATGCTAATATCTGCAAC 63 327 984 Antisense
ATCTGCAACACCAAGTTTATTCCAA 182 33 1000 Antisense
TGTGAATAAGCTTTCTCTAGTTAGA 576 553 1128 Antisense
AAATCGTACTATTGTTGTGCATGGT 209 117 1323 Antisense
TAATCCATTACTACCCAGTCCAAGA 516 629 1347 Antisense
TTCCGTTTCGAGTTACATACGCCAC 169 697 1376 Antisense
ACATACGCCACAAATGCTGCATTTA 457 105 1390 Antisense
Sequence Source Affymetrix Proprietary Database