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[180897_at]

Description Y51H1A.7 /REP_DB=WormBase Gene ID /WP=CE20289 /TR=Q9XWJ4 /GB=CAA21670.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 39      4grp_high_8_8 > 50      6grp_highest_nonorm > 80      6grp_total > 29      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 298.7
(3)
P 		281.9
(2.2)
P 		257
(1)
P 		171.7
(-3)
P 		127
B 265.7
(3)
P 		204.3
(-2.1)
M 		207.4
(-1.8)
P 		192.8
(-3)
P 		73
C 266.4
(3)
P 		184
(-1.8)
P 		258.5
(2.5)
P 		162.4
(-3)
P 		104
avr 276.9
(3) 		223.4
(-0.2) 		241
(0.9) 		175.6
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 255.2
(3)
P 		234.1
(2.1)
P 		109.6
(-3)
P 		179.9
(-0.1)
P 		184.7
(0.1)
P 		248.8
(2.7)
P 		146
B 255.6
(3)
P 		164
(-1.2)
P 		126.2
(-3)
P 		144.9
(-2.1)
P 		182.1
(-0.4)
P 		209.7
(0.9)
P 		129
C 378.9
(3)
P 		162.2
(-1.4)
P 		196
(-0.7)
P 		81.7
(-3)
P 		301.8
(1.4)
P 		171
(-1.2)
P 		297
avr 296.6
(3) 		186.8
(-1.1) 		143.9
(-2.7) 		135.5
(-3) 		222.9
(0.3) 		209.8
(-0.2) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 108.8
(3)
P 		61.2
(-0.4)
P 		67.2
(0)
P 		25.1
(-3)
P 		84
B 84.7
(3)
P 		50.4
(-1.7)
M 		48.1
(-2)
P 		41.1
(-3)
P 		44
C 88.2
(2.8)
P 		52.9
(-0.6)
P 		90.1
(3)
P 		27.4
(-3)
P 		63
avr 93.9
(3) 		54.8
(-0.7) 		68.5
(0.6) 		31.2
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 47.1
(-0.7)
P 		83.2
(3)
P 		23.9
(-3)
P 		45.6
(-0.8)
P 		55.7
(0.2)
P 		60.6
(0.7)
P 		59
B 88.9
(3)
P 		54.6
(-0.5)
P 		30.6
(-3)
P 		38.4
(-2.2)
P 		74
(1.5)
P 		78.2
(1.9)
P 		58
C 140.4
(3)
P 		49.5
(-1.4)
P 		49.9
(-1.4)
P 		16.4
(-3)
P 		97.6
(0.9)
P 		57.2
(-1)
P 		124
avr 92.1
(3) 		62.4
(-0) 		34.8
(-2.9) 		33.5
(-3) 		75.8
(1.3) 		65.3
(0.3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3945
Sequence Type Exemplar sequence
Representative Public ID Y51H1A.7 NCBI
Target Description Y51H1A.7 /REP_DB=WormBase Gene ID /WP=CE20289 /TR=Q9XWJ4 /GB=CAA21670.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064511 NCBI Caenorhabditis elegans Y51H1A.7 (Y51H1A.7) mRNA, complete cds. 11/11 None
SNAP00000044416 ENSEMBL cdna:SNAP chromosome:CEL140:II:13882607:13898052:1 11/11 None
GENEFINDER00000044417 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13895750:13898052:1 11/11 None
Y51H1A.7 ENSEMBL cdna:known chromosome:CEL140:II:13895750:13898242:1 gene:Y51H1A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13895746-13898049(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H1A.7
Entrez Gene 175041 Entrez gene
SwissProt Q9XWJ4 EMBL-EBI
WormBase CE20289 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21671 Hypothetical protein Y51H1A.6 [Caenorhabditis elegans] ref|NP_496911.1| Y51H1A.6 [Caenorhabditis elegans] 0.0
blast CAA21669 Hypothetical protein Y51H1A.5 [Caenorhabditis elegans] ref|NP_496910.1| Histone DeAcetylase family member (hda-6) [Caenorhabditis elegans] 0.0
blast CAE73261 Hypothetical protein CBG20677 [Caenorhabditis briggsae] 1.0E-169
blast CAA21670 Hypothetical protein Y51H1A.7 [Caenorhabditis elegans] ref|NP_496912.1| Y51H1A.7 [Caenorhabditis elegans] 1.0E-137
blast CAA21670 Hypothetical protein Y51H1A.7 [Caenorhabditis elegans] ref|NP_496912.1| Y51H1A.7 [Caenorhabditis elegans] 1.0E-131
blast CAE73259 Hypothetical protein CBG20675 [Caenorhabditis briggsae] 3.0E-63
blast CAE73259 Hypothetical protein CBG20675 [Caenorhabditis briggsae] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 9.5E-85
Sequence
Target Sequence 
>C. ELEGANS:180897_AT
agcatcaccagctaagccacagtatagacctcaaccgccagctcggagccacgaggagta
tacccaaaggatcatgaataaggtgaaggagtacatgccgagacgacgccccgatgctta
tgatcttcagcagggtcagcagcagagccggcttcagatgctccgagagcagaccctgct
ccgtgctccgctggaagaggagaagccgcctgtcgccacaatggccccagttccagacga
gcacaaggcgatcccgtggactcggcctggccggaaacgggcgatggggcctggggaggc
ggcgacggcgcctgcgaagaggcgaggaaggcctacgaaaaaggaggaggcggcggaagc
ggcggccaaattgattcaggccgagaatgagatggttgtagaggaggaggaggtggagga
gcccccagtggtggagcaggagcaggtgccaaaagagaaagaagtagaggttgcagaggc
tgaaaagctgccggaacaagtcaaaactgagccatcggtcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATCACCAGCTAAGCCACAGTAT 110 79 465 Antisense
TAAGCCACAGTATAGACCTCAACCG 470 599 477 Antisense
TCGGAGCCACGAGGAGTATACCCAA 161 605 507 Antisense
AAGGAGTACATGCCGAGACGACGCC 169 159 550 Antisense
CGCCCCGATGCTTATGATCTTCAGC 699 255 571 Antisense
GATCTTCAGCAGGGTCAGCAGCAGA 522 419 586 Antisense
GCAGCAGAGCCGGCTTCAGATGCTC 578 313 603 Antisense
TCCAGACGAGCACAAGGCGATCCCG 381 585 696 Antisense
CGTGGACTCGGCCTGGCCGGAAACG 274 243 719 Antisense
GAAGCGGCGGCCAAATTGATTCAGG 239 343 820 Antisense
AGTCAAAACTGAGCCATCGGTCACC 658 53 963 Antisense
Sequence Source Affymetrix Proprietary Database