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[180896_at]

Description T03F1.7 /REP_DB=WormBase Gene ID /WP=CE13108 /TR=P91424 /GB=AAB42235.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_total > 88      4grp_total > 10      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 454
1 2 3 4 range
A 321
(-3)
P 		418.1
(-1.3)
P 		476.9
(-0.3)
P 		669.2
(3)
P 		348
B 395.4
(-2)
P 		445.3
(-1.4)
P 		321
(-3)
P 		775
(3)
P 		454
C 480
(-1.3)
P 		465.1
(-1.5)
P 		367.9
(-3)
P 		759.9
(3)
P 		392
avr 398.8
(-2.8) 		442.8
(-2.1) 		388.6
(-3) 		734.7
(3) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 331.9
(-1.2)
A 		275.5
(-2.2)
P 		231.7
(-3)
P 		237.2
(-2.9)
P 		405.7
(0)
P 		574.5
(3)
P 		343
B 251.6
(-2.1)
P 		204.3
(-3)
M 		242
(-2.3)
M 		339.3
(-0.3)
P 		508.4
(3)
P 		433.1
(1.5)
P 		304
C 220.8
(-2.8)
P 		208.5
(-3)
P 		264.1
(-2.2)
P 		239.3
(-2.5)
P 		337.2
(-1.1)
P 		604.5
(3)
P 		396
avr 268.1
(-2.2) 		229.4
(-3) 		245.9
(-2.7) 		271.9
(-2.2) 		417.1
(0.7) 		537.4
(3) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 116.9
(1.6)
P 		90.7
(-3)
P 		124.7
(3)
P 		98
(-1.7)
P 		34
B 126.1
(0.4)
P 		110
(-0.6)
P 		74.4
(-3)
P 		165.2
(3)
P 		91
C 158.9
(3)
P 		133.7
(-1.9)
P 		128.2
(-3)
P 		128.1
(-3)
P 		31
avr 134
(3) 		111.5
(-2.4) 		109.1
(-3) 		130.4
(2.1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 61.2
(-2.3)
A 		98
(0.2)
P 		50.5
(-3)
P 		60.2
(-2.3)
P 		122.4
(1.8)
P 		139.9
(3)
P 		89
B 87.5
(-1.8)
P 		68
(-2.6)
M 		58.8
(-3)
M 		89.9
(-1.7)
P 		206.6
(3)
P 		161.5
(1.2)
P 		148
C 81.8
(-1.7)
P 		63.6
(-2.4)
P 		67.2
(-2.3)
P 		48.1
(-3)
P 		109.1
(-0.6)
P 		202.4
(3)
P 		154
avr 76.8
(-2) 		76.5
(-2) 		58.8
(-3) 		66.1
(-2.6) 		146
(1.8) 		167.9
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.178
Sequence Type Exemplar sequence
Representative Public ID T03F1.7 NCBI
Target Description T03F1.7 /REP_DB=WormBase Gene ID /WP=CE13108 /TR=P91424 /GB=AAB42235.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058841 NCBI Caenorhabditis elegans T03F1.7 (T03F1.7) mRNA, complete cds. 11/11 None
SNAP00000013115 ENSEMBL cdna:SNAP chromosome:CEL140:I:3854248:3859294:-1 11/11 None
GENEFINDER00000013133 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3854248:3860577:-1 11/11 None
T03F1.7 ENSEMBL cdna:known chromosome:CEL140:I:3854185:3859294:-1 gene:T03F1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3855663-3859294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03F1.7
Entrez Gene 188022 Entrez gene
SwissProt P91424 EMBL-EBI
WormBase CE30685 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585510_AT similar to transcription factor B1, mitochondrial cfa
CANINE_2:CFA.11314.1.A1_AT similar to transcription factor B1, mitochondrial cfa
CANINE_2:CFAAFFX.1797.1.S1_S_AT similar to transcription factor B1, mitochondrial cfa
DROSOPHILA_2:1637555_AT dm
DROSGENOME1:154901_AT dm
CHICKEN:GGA.12370.3.S1_A_AT similar to MGC68924 protein gga
CHICKEN:GGAAFFX.24240.1.S1_S_AT similar to MGC68924 protein gga
CHICKEN:GGAAFFX.8692.1.A1_AT similar to MGC68924 protein gga
HG-U133_PLUS_2:219169_S_AT transcription factor B1, mitochondrial hs
HG-U133A:219169_S_AT transcription factor B1, mitochondrial hs
HG-U133A_2:219169_S_AT transcription factor B1, mitochondrial hs
HU35KSUBA:RC_AA405744_AT transcription factor B1, mitochondrial hs
U133_X3P:HS.12598.2.A1_3P_S_AT transcription factor B1, mitochondrial hs
U133_X3P:HS.12598.2.A1_3P_AT transcription factor B1, mitochondrial hs
U133_X3P:228075_3P_X_AT transcription factor B1, mitochondrial hs
HG-U133_PLUS_2:228075_X_AT transcription factor B1, mitochondrial hs
HG-U133B:228075_X_AT transcription factor B1, mitochondrial hs
HG-U95B:53767_AT transcription factor B1, mitochondrial hs
HG-U95B:53772_G_AT transcription factor B1, mitochondrial hs
HG-U95C:65161_AT transcription factor B1, mitochondrial hs
MOE430A:1435924_AT transcription factor B1, mitochondrial mm
MOUSE430A_2:1435924_AT transcription factor B1, mitochondrial mm
MOUSE430_2:1435924_AT transcription factor B1, mitochondrial mm
MOE430A:1449749_S_AT transcription factor B1, mitochondrial mm
MOUSE430A_2:1449749_S_AT transcription factor B1, mitochondrial mm
MOUSE430_2:1449749_S_AT transcription factor B1, mitochondrial mm
MU19KSUBC:TC40947_AT Transcription factor B1, mitochondrial (Tfb1m), mRNA mm
MU19KSUBC:TC41294_AT Transcription factor B1, mitochondrial (Tfb1m), mRNA mm
RAE230B:1379949_AT transcription factor B1, mitochondrial rn
RAT230_2:1379949_AT transcription factor B1, mitochondrial rn
RG-U34A:RC_AI639251_AT Transcription factor B1, mitochondrial rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
154 rRNA modification inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
179 rRNA (adenine-N6,N6-)-dimethyltransferase activity inferred from electronic annotation QuickGO AmiGO
8649 rRNA methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491242 T03F1.7 [Caenorhabditis elegans] gb|AAB42235.2| Hypothetical protein T03F1.7 [Caenorhabditis elegans] 0.0
blast CAE66633 Hypothetical protein CBG11970 [Caenorhabditis briggsae] 1.0E-171
blast NP_491243 T03F1.8 [Caenorhabditis elegans] gb|AAB42236.2| Hypothetical protein T03F1.8 [Caenorhabditis elegans] 1.0E-106
blast CAI20506 TFB1M [Homo sapiens] gb|AAH17788.1| Transcription factor B1, mitochondrial [Homo sapiens] 1.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR001737 EMBL-EBI Ribosomal RNA adenine dimethylase 3.1E-33
Pfam IPR008144 EMBL-EBI Guanylate kinase 2.5E-51
Pfam IPR001737 EMBL-EBI Ribosomal RNA adenine dimethylase 3.1E-33
Sequence
Target Sequence 
>C. ELEGANS:180896_AT
atattgcttcaccgcttattattaagtatctccgtgacatgtcataccgacgaggagttt
ggcagtacggtcgagttccactaacattaacttttcaactggaagtcgccaaacgtctgt
gctctccgatcgcctgtgatactcggtctcgtatctctattatgtctcaatacgtggcag
agcctaagatggtttttcagatttccggctcatgtttcgtgccaagacctcaagttgacg
ttggagttgttcgtttcgtaccacggaagactcctctagtgaatacatcgtttgaagttc
tcgagaaagtttgtcgccaagtgttccattaccgtcaaaagtatgtaacaaaaggattga
aaactctgtatcctgaggaattggaagacgagctttcagatgatctactgaaaaagtgtc
gaatcgatccgacgacaacgtcgattcggctcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTGCTTCACCGCTTATTATTAA 230 17 446 Antisense
GTATCTCCGTGACATGTCATACCGA 588 453 471 Antisense
AGTACGGTCGAGTTCCACTAACATT 194 59 509 Antisense
ACTGGAAGTCGCCAAACGTCTGTGC 286 95 543 Antisense
CTCCGATCGCCTGTGATACTCGGTC 261 235 569 Antisense
ACTCGGTCTCGTATCTCTATTATGT 450 99 586 Antisense
TTCCGGCTCATGTTTCGTGCCAAGA 339 699 648 Antisense
CGTGCCAAGACCTCAAGTTGACGTT 18 245 663 Antisense
GTACCACGGAAGACTCCTCTAGTGA 584 457 703 Antisense
AGTTTGTCGCCAAGTGTTCCATTAC 254 63 753 Antisense
CGACGACAACGTCGATTCGGCTCGG 160 251 875 Antisense
Sequence Source Affymetrix Proprietary Database