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[180895_at]

Description K10G6.2 /REP_DB=WormBase Gene ID /WP=CE12100 /TR=O16627 /GB=AAB66097.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 21.2
(-3)
A 		188.5
(1.8)
A 		229.6
(3)
A 		19.6
(-3)
A 		210
B 19.1
(-2.9)
A 		119.7
(0.8)
A 		178
(3)
A 		16.6
(-3)
A 		161
C 4.2
(-3)
A 		242.1
(3)
A 		192.9
(1.8)
A 		33.2
(-2.3)
A 		238
avr 14.8
(-3) 		183.4
(2.5) 		200.2
(3) 		23.1
(-2.7) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 12.3
(-3)
A 		204.8
(3)
A 		101.6
(-0.2)
A 		139.1
(1)
A 		152
(1.4)
A 		14.4
(-2.9)
A 		193
B 12.7
(-3)
A 		223.2
(3)
A 		140.4
(0.6)
A 		156.2
(1.1)
A 		129.5
(0.3)
A 		41.9
(-2.2)
A 		211
C 38.8
(-2.4)
A 		225.8
(3)
A 		142.1
(0.6)
A 		183
(1.8)
A 		133.8
(0.4)
A 		16.6
(-3)
A 		209
avr 21.3
(-3) 		217.9
(3) 		128
(0.3) 		159.4
(1.2) 		138.4
(0.6) 		24.3
(-2.9) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 7.7
(-2.5)
A 		40.9
(1)
A 		60
(3)
A 		2.9
(-3)
A 		57
B 6.1
(-2.6)
A 		29.6
(1.1)
A 		41.3
(3)
A 		3.5
(-3)
A 		38
C 1.4
(-3)
A 		69.6
(3)
A 		67.2
(2.8)
A 		5.6
(-2.6)
A 		68
avr 5.1
(-2.9) 		46.7
(1.9) 		56.2
(3) 		4
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 2.3
(-3)
A 		72.8
(3)
A 		22.1
(-1.3)
A 		35.3
(-0.2)
A 		45.9
(0.7)
A 		3.5
(-2.9)
A 		71
B 4.4
(-3)
A 		74.3
(3)
A 		34.1
(-0.5)
A 		41.4
(0.2)
A 		52.6
(1.1)
A 		15.6
(-2)
A 		70
C 14.4
(-2.2)
A 		68.9
(3)
A 		36.2
(-0.1)
A 		36.8
(-0)
A 		43.3
(0.6)
A 		5.6
(-3)
A 		63
avr 7
(-3) 		72
(3) 		30.8
(-0.8) 		37.8
(-0.2) 		47.3
(0.7) 		8.2
(-2.9) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4855
Sequence Type Exemplar sequence
Representative Public ID K10G6.2 NCBI
Target Description K10G6.2 /REP_DB=WormBase Gene ID /WP=CE12100 /TR=O16627 /GB=AAB66097.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062302 NCBI Caenorhabditis elegans K10G6.2 (K10G6.2) mRNA, complete cds. 11/11 None
SNAP00000011082 ENSEMBL cdna:SNAP chromosome:CEL140:II:3975175:3977963:1 11/11 None
GENEFINDER00000011085 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3976284:3982355:1 11/11 None
K10G6.2 ENSEMBL cdna:known chromosome:CEL140:II:3976284:3977798:1 gene:K10G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3976282-3977797(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10G6.2
Entrez Gene 187282 Entrez gene
SwissProt O16627 EMBL-EBI
WormBase CE12100 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494703 K10G6.2 [Caenorhabditis elegans] gb|AAB66097.1| Hypothetical protein K10G6.2 [Caenorhabditis elegans] 1.0E-167
blast CAE71508 Hypothetical protein CBG18440 [Caenorhabditis briggsae] 1.0E-163
blast NP_494703 K10G6.2 [Caenorhabditis elegans] gb|AAB66097.1| Hypothetical protein K10G6.2 [Caenorhabditis elegans] 1.0E-156
blast CAE71508 Hypothetical protein CBG18440 [Caenorhabditis briggsae] 1.0E-154
Sequence
Target Sequence 
>C. ELEGANS:180895_AT
tactgtcgttcatccaacattgctacgtataatgaagaagtcagaatcatctgtgaacga
tatcgtacctattgttccgatcgtgtttatccttcaattaatcatattcgtcgtcaaaca
aaattctgggaaggcgcaggagtgccgaaggcaacaattcaagcaatgtcctcgtgttat
tcacattgcaaggagactgatccggtttgcgtaaacgcttgcgagtgccttcatcttcaa
tggatgatgaactacgaatgttacccgggaacccgtgctcctgcttacaacaactgtcaa
agatgggcggccaagtgccgaacggtctggaagccccgtacagattacacgccagctgat
tacagggatatggcacctccgccaattgtgagaggagtcttttatggatatgatggtctg
gcaacacatcggacctttgatcgtccacgcgatcacggagtctcattcttccgtggaaca
aatacggtccttgtggattggccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGTCGTTCATCCAACATTGCTA 472 647 214 Antisense
GTTCCGATCGTGTTTATCCTTCAAT 381 441 287 Antisense
CAAGCAATGTCCTCGTGTTATTCAC 698 185 373 Antisense
GGAGACTGATCCGGTTTGCGTAAAC 133 519 405 Antisense
GTAAACGCTTGCGAGTGCCTTCATC 514 461 424 Antisense
TGCTCCTGCTTACAACAACTGTCAA 692 581 489 Antisense
TGGAAGCCCCGTACAGATTACACGC 302 547 541 Antisense
TATGGCACCTCCGCCAATTGTGAGA 235 655 582 Antisense
GCAACACATCGGACCTTTGATCGTC 442 319 634 Antisense
GCGATCACGGAGTCTCATTCTTCCG 137 289 662 Antisense
ATACGGTCCTTGTGGATTGGCCAGA 301 5 695 Antisense
Sequence Source Affymetrix Proprietary Database