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[180894_at]

Description F52D1.2 /REP_DB=WormBase Gene ID /WP=CE10830 /TR=O17350 /GB=AAB71268.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 63      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 70.9
(0.1)
A 		46.6
(-3)
A 		94.4
(3)
A 		48.7
(-2.7)
A 		48
B 72.4
(3)
A 		54.3
(0)
A 		50.1
(-0.7)
A 		35.9
(-3)
A 		37
C 80.6
(2.6)
A 		58.8
(-3)
A 		70.6
(0)
A 		82.2
(3)
P 		23
avr 74.6
(3) 		53.2
(-3) 		71.7
(2.2) 		55.6
(-2.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 30.6
(-3)
A 		100.3
(1.5)
A 		103.5
(1.7)
A 		123.4
(3)
A 		114
(2.4)
M 		98
(1.4)
A 		93
B 71.1
(-2.9)
A 		144.4
(0.6)
P 		158.2
(1.2)
M 		132.2
(0)
A 		195.1
(3)
P 		69.3
(-3)
A 		126
C 90
(-2.7)
A 		123.9
(0.2)
M 		101.7
(-1.7)
A 		149.5
(2.4)
A 		157
(3)
P 		86.6
(-3)
P 		70
avr 63.9
(-3) 		122.9
(0.9) 		121.1
(0.8) 		135
(1.7) 		155.4
(3) 		84.6
(-1.6) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 25.8
(3)
A 		10.1
(-2)
A 		24.7
(2.6)
A 		7.1
(-3)
A 		19
B 23.1
(3)
A 		13.4
(-0.8)
A 		11.6
(-1.5)
A 		7.6
(-3)
A 		16
C 26.7
(3)
A 		16.9
(-1.6)
A 		24.6
(2)
A 		13.9
(-3)
P 		13
avr 25.2
(3) 		13.5
(-1.5) 		20.3
(1.1) 		9.5
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 5.6
(-3)
A 		35.7
(3)
A 		22.5
(0.4)
A 		31.3
(2.1)
A 		34.4
(2.7)
M 		23.9
(0.6)
A 		30
B 24.8
(-3)
A 		48.1
(-0.4)
P 		38.4
(-1.5)
M 		35
(-1.9)
A 		79.3
(3)
P 		25.9
(-2.9)
A 		55
C 33.3
(-1.2)
A 		37.8
(-0.1)
M 		25.9
(-3)
A 		30.1
(-2)
A 		50.8
(3)
P 		29
(-2.3)
P 		25
avr 21.2
(-3) 		40.5
(0.4) 		28.9
(-1.6) 		32.1
(-1.1) 		54.8
(3) 		26.3
(-2.1) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18232
Sequence Type Exemplar sequence
Representative Public ID F52D1.2 NCBI
Target Description F52D1.2 /REP_DB=WormBase Gene ID /WP=CE10830 /TR=O17350 /GB=AAB71268.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075702(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075702 NCBI Caenorhabditis elegans F52D1.2 (F52D1.2) mRNA, complete cds. 10/11 None
GENEFINDER00000022788 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:446357:450213:-1 10/11 None
F52D1.2 ENSEMBL cdna:known chromosome:CEL140:X:446357:448904:-1 gene:F52D1.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022773 4/11 Cross Hyb Matching Probes None
SNAP00000022774 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:446356-448904(-) 89.82 89.82
Public Domain and Genome References
Gene Title
Ensembl F52D1.2
Entrez Gene 186101 Entrez gene
SwissProt O17350 EMBL-EBI
WormBase CE35717 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71268 Hypothetical protein F52D1.2 [Caenorhabditis elegans] ref|NP_508103.2| F52D1.2 [Caenorhabditis elegans] 1.0E-81
blast AAB71268 Hypothetical protein F52D1.2 [Caenorhabditis elegans] ref|NP_508103.2| F52D1.2 [Caenorhabditis elegans] 2.0E-81
Sequence
Target Sequence 
>C. ELEGANS:180894_AT
catatcgaatatgcgtctgtttcaaatgaggattacgatatgaacccggcaatggattta
atccatgaggatcttgcaagagcggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnncatccaatttccagagtcttcttaccgactttaacacaaaaatt
gacgaatttgagcacggcttcgtcaacctgggatatgttgagaagaacgcggttgttcaa
gaacgagattcaaactcagctatggaaaaaataaagacaaagtcttgtgacactgaaact
tctccagttgccaagtcaccatcaagt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATATCGAATATGCGTCTGTTTCAA 648 213 142 Antisense
GAGGATTACGATATGAACCCGGCAA 138 403 169 Antisense
ATGAACCCGGCAATGGATTTAATCC 522 29 181 Antisense
ATCCAATTTCCAGAGTCTTCTTACC 311 41 279 Antisense
GAGTCTTCTTACCGACTTTAACACA 631 399 291 Antisense
GAATTTGAGCACGGCTTCGTCAACC 651 325 325 Antisense
GGCTTCGTCAACCTGGGATATGTTG 76 537 337 Antisense
GAACGAGATTCAAACTCAGCTATGG 645 345 382 Antisense
GTCTTGTGACACTGAAACTTCTCCA 273 467 423 Antisense
GACACTGAAACTTCTCCAGTTGCCA 500 367 430 Antisense
TCCAGTTGCCAAGTCACCATCAAGT 157 591 444 Antisense
Sequence Source Affymetrix Proprietary Database