[Home] | [Total List]

[180892_at]

Description T02H6.5 /REP_DB=WormBase Gene ID /WP=CE21141 /TR=Q9N5E7 /GB=AAF39964.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.7
(1.2)
A 		4.8
(3)
A 		1.1
(-3)
A 		4.1
(1.9)
A 		4
B 1.4
(-3)
A 		2.1
(-1.3)
A 		3.9
(3)
A 		3.5
(2)
A 		3
C 1.1
(-2.9)
A 		5.3
(3)
A 		1
(-3)
A 		1.6
(-2.2)
A 		4
avr 2.1
(-2.7) 		4.1
(3) 		2
(-3) 		3.1
(0.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 4.1
(-1.3)
A 		1.1
(-3)
A 		1.3
(-2.9)
A 		2.7
(-2.1)
A 		5
(-0.8)
A 		11.9
(3)
A 		11
B 8.2
(-2.1)
A 		3.9
(-2.8)
A 		2.4
(-3)
A 		41.6
(3)
A 		22
(-0)
A 		4.2
(-2.7)
A 		39
C 4.3
(-2.5)
A 		1.3
(-3)
A 		2.7
(-2.8)
A 		5.7
(-2.3)
A 		39.2
(3)
A 		1.7
(-2.9)
A 		38
avr 5.5
(-2) 		2.1
(-3) 		2.1
(-3) 		16.7
(1.4) 		22.1
(3) 		5.9
(-1.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.3
(3)
A 		1
(1.2)
A 		0.3
(-3)
A 		0.6
(-1.2)
A 		1
B 0.5
(-3)
A 		0.5
(-3)
A 		0.9
(3)
A 		0.7
(-0)
A 		0
C 0.4
(-2.5)
A 		1.5
(3)
A 		0.4
(-2.5)
A 		0.3
(-3)
A 		1
avr 0.7
(-0.6) 		1
(3) 		0.5
(-3) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.8
(-1.8)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		0.7
(-2.1)
A 		1.5
(-0.2)
A 		2.9
(3)
A 		3
B 2.9
(-1.7)
A 		1.3
(-2.6)
A 		0.6
(-3)
A 		11
(3)
A 		8.9
(1.8)
A 		1.6
(-2.4)
A 		10
C 1.6
(-2.4)
A 		0.4
(-3)
A 		0.7
(-2.9)
A 		1.1
(-2.7)
A 		12.7
(3)
A 		0.6
(-2.9)
A 		12
avr 1.8
(-1.9) 		0.7
(-2.8) 		0.5
(-3) 		4.3
(0.2) 		7.7
(3) 		1.7
(-2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4647
Sequence Type Exemplar sequence
Representative Public ID T02H6.5 NCBI
Target Description T02H6.5 /REP_DB=WormBase Gene ID /WP=CE21141 /TR=Q9N5E7 /GB=AAF39964.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061391 NCBI Caenorhabditis elegans T02H6.5 (T02H6.5) mRNA, complete cds. 11/11 None
SNAP00000003364 ENSEMBL cdna:SNAP chromosome:CEL140:II:687863:689327:1 9/11 None
T02H6.5 ENSEMBL cdna:known chromosome:CEL140:II:685240:689020:1 gene:T02H6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003376 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:685239-688896(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02H6.5
Entrez Gene 173458 Entrez gene
SwissProt Q9N5E7 EMBL-EBI
WormBase CE21141 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39964 Hypothetical protein T02H6.5 [Caenorhabditis elegans] ref|NP_493792.1| T02H6.5 [Caenorhabditis elegans] 0.0
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 1.0E-108
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 8.0E-92
blast AAF39964 Hypothetical protein T02H6.5 [Caenorhabditis elegans] ref|NP_493792.1| T02H6.5 [Caenorhabditis elegans] 3.0E-71
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 4.0E-38
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-7
Sequence
Target Sequence 
>C. ELEGANS:180892_AT
agactccataagccatccattgtttcaaaagtgtgactatatggagatagtaggaaatac
ttcatatatctcaaataatgaaatgaattttgtattgaacaatttcaaactgaaaaatgg
actgcttactaattgtttgattgccgaagatttcgatgtgacagctatgcagcagattcc
tcgtttggttattttcaacgcacaacatatcacagtagaagatttaataaaaatggattg
tgaaactatcaaattgtgttatcatcaattcaaaccacgacatatcaatcagttacttca
tcattggttgtcgggagaaatgcccaagttacgaagattccgtttgaacttctattgtga
tactacgtggatcggtgtagttttatctggaatagaacattcgaaatgggatgggcaacg
ccgagcaaagttttttcgcgatggaattgagtcgattgactgtggaaatggatttgatat
agaacgcaacgatggacttcttgcaacgttttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTCCATAAGCCATCCATTGTTT 251 71 531 Antisense
GACAGCTATGCAGCAGATTCCTCGT 87 369 690 Antisense
ATTTTCAACGCACAACATATCACAG 317 13 721 Antisense
TCATCAATTCAAACCACGACATATC 34 621 792 Antisense
ACGACATATCAATCAGTTACTTCAT 568 91 807 Antisense
GTTACTTCATCATTGGTTGTCGGGA 37 447 822 Antisense
GAAATGCCCAAGTTACGAAGATTCC 478 361 847 Antisense
GATTCCGTTTGAACTTCTATTGTGA 464 433 866 Antisense
GAAATGGGATGGGCAACGCCGAGCA 304 361 933 Antisense
ACGCCGAGCAAAGTTTTTTCGCGAT 464 91 948 Antisense
GATGGACTTCTTGCAACGTTTTCTA 109 403 1021 Antisense
Sequence Source Affymetrix Proprietary Database