[Home] | [Total List]

[180889_at]

Description T17H7.1 /REP_DB=WormBase Gene ID /WP=CE07502 /TR=Q22537 /GB=AAC48170.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 749
1 2 3 4 range
A 47.9
(-2.7)
A 		756.8
(3)
P 		490.3
(0.9)
P 		7.4
(-3)
A 		749
B 46.6
(-2.7)
A 		533.1
(3)
P 		497.5
(2.6)
P 		23
(-3)
A 		510
C 11.1
(-3)
A 		424.6
(2)
P 		508.5
(3)
P 		10.9
(-3)
A 		498
avr 35.2
(-2.8) 		571.5
(3) 		498.8
(2.2) 		13.8
(-3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 279.7
(0)
P 		337.3
(1)
P 		254.9
(-0.4)
P 		459.7
(3)
P 		338.6
(1)
P 		94
(-3)
A 		366
B 336.4
(1.4)
P 		333.2
(1.3)
P 		362.3
(2)
P 		409.2
(3)
P 		319.9
(1)
P 		135.7
(-3)
A 		274
C 318.2
(0.3)
P 		349
(0.7)
P 		355.3
(0.8)
P 		309.5
(0.1)
P 		499
(3)
P 		101.9
(-3)
A 		397
avr 311.4
(1.3) 		339.8
(1.9) 		324.2
(1.5) 		392.8
(3) 		385.8
(2.9) 		110.5
(-3) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 17.4
(-2.4)
A 		164.3
(3)
P 		128.2
(1.7)
P 		1.1
(-3)
A 		163
B 14.9
(-2.5)
A 		131.7
(3)
P 		115.3
(2.2)
P 		4.9
(-3)
A 		127
C 3.7
(-2.9)
A 		122.1
(1.1)
P 		177.2
(3)
P 		1.8
(-3)
A 		175
avr 12
(-2.6) 		139.4
(3) 		140.2
(3) 		2.6
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 51.6
(-1.2)
P 		120
(3)
P 		55.5
(-1)
P 		116.6
(2.8)
P 		102.2
(1.9)
P 		22.9
(-3)
A 		97
B 117.1
(2)
P 		110.9
(1.6)
P 		88
(-0.2)
P 		108.4
(1.4)
P 		130
(3)
P 		50.6
(-3)
A 		79
C 117.9
(0.9)
P 		106.5
(0.4)
P 		90.4
(-0.3)
P 		62.2
(-1.7)
P 		161.5
(3)
P 		34.1
(-3)
A 		127
avr 95.5
(0.8) 		112.5
(1.8) 		78
(-0.3) 		95.7
(0.8) 		131.2
(3) 		35.9
(-3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8320
Sequence Type Exemplar sequence
Representative Public ID T17H7.1 NCBI
Target Description T17H7.1 /REP_DB=WormBase Gene ID /WP=CE07502 /TR=Q22537 /GB=AAC48170.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064849 NCBI Caenorhabditis elegans T17H7.1 (T17H7.1) mRNA, complete cds. 11/11 None
SNAP00000004139 ENSEMBL cdna:SNAP chromosome:CEL140:III:740682:742823:1 11/11 None
GENEFINDER00000004142 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:740682:742823:1 11/11 None
T17H7.1 ENSEMBL cdna:known chromosome:CEL140:III:740676:742968:1 gene:T17H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:740681-742823(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T17H7.1
Entrez Gene 175228 Entrez gene
SwissProt Q22537 EMBL-EBI
WormBase CE07502 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48170 Hypothetical protein T17H7.1 [Caenorhabditis elegans] ref|NP_497250.1| T17H7.1 [Caenorhabditis elegans] 1.0E-144
blast CAE69197 Hypothetical protein CBG15236 [Caenorhabditis briggsae] 4.0E-73
blast AAB69957 Prion-like-(q/n-rich)-domain-bearing protein protein 97 [Caenorhabditis elegans] ref|NP_503262.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-97) [Caenorhabditis elegans] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 6.2E-59
Sequence
Target Sequence 
>C. ELEGANS:180889_AT
gacgggcgtggtcagggaccagactttggaccaggaagtcaaggaggccgtgggcaagat
tcagactcgggatctcaggatgccttcccaggacgtagaggctcaggcggtccaggagga
cgtgggcaaggaccagacttcggaccacaagatgacttcccaggacgtagaggctcaggc
ggtccagaaggacgtgacggacgtggtcagggaccagactttggaccaggaagtcaagga
ggccgtgggcaagattcagactcgggatctcaggatgccttcccaggacgtagaggcccg
ggaggtccgggaggacttggtggacgtggacaggggccagatttcggaccaggaggtcaa
ggagaccgtggccaaggaccggactttggggcaagaagccaaggaaatcgcggacaagga
ccagcttttgagtcaagacagccccgtcaatttgatgatgcagatacatcttccgctcct
tctcaaaaatatttccaacgccaaatgaattcgggaatgcgattcgatcaaagttcagga
ttcggaatgcggaaaagccagtcaactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGGCGTGGTCAGGGACCAGACT 686 369 1462 Antisense
GACGTGGGCAAGGACCAGACTTCGG 640 377 1580 Antisense
GACGGACGTGGTCAGGGACCAGACT 687 369 1657 Antisense
GGACTTGGTGGACGTGGACAGGGGC 138 509 1774 Antisense
TCAAGGAGACCGTGGCCAAGGACCG 278 627 1818 Antisense
GCCAAGGACCGGACTTTGGGGCAAG 423 275 1832 Antisense
AAGGAAATCGCGGACAAGGACCAGC 106 159 1862 Antisense
GCTTTTGAGTCAAGACAGCCCCGTC 506 303 1885 Antisense
GACAGCCCCGTCAATTTGATGATGC 2 369 1898 Antisense
TGATGCAGATACATCTTCCGCTCCT 707 565 1917 Antisense
GAATGCGGAAAAGCCAGTCAACTCA 187 331 2006 Antisense
Sequence Source Affymetrix Proprietary Database