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[180888_at]

Description F02C12.1 /REP_DB=WormBase Gene ID /WP=CE18568 /TR=Q19107 /GB=CAA91022.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      6grp_highest_nonorm > 82      6grp_total > 65      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 179.2
(1.3)
P 		174.2
(1.2)
P 		242.7
(3)
P 		14.2
(-3)
A 		229
B 193.5
(1.1)
P 		186.1
(0.9)
P 		268.8
(3)
P 		36.2
(-3)
A 		233
C 128.1
(-2.1)
P 		185.7
(0.1)
P 		263
(3)
P 		104.9
(-3)
A 		158
avr 166.9
(0.3) 		182
(0.8) 		258.2
(3) 		51.8
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 256.1
(-3)
P 		290.3
(-1.3)
P 		281.7
(-1.7)
P 		322.5
(0.3)
P 		299.2
(-0.9)
P 		376.8
(3)
P 		121
B 304.2
(-0.9)
P 		240
(-3)
P 		420.6
(3)
P 		266
(-2.1)
P 		300.1
(-1)
P 		384.7
(1.8)
P 		181
C 313.4
(-1.7)
P 		280.9
(-2.8)
P 		370.2
(0.3)
P 		435.7
(2.6)
P 		275.3
(-3)
P 		447.4
(3)
P 		172
avr 291.2
(-2.1) 		270.4
(-3) 		357.5
(0.9) 		341.4
(0.2) 		291.5
(-2) 		403
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 65.3
(3)
P 		37.8
(0.4)
P 		63.5
(2.8)
P 		2.1
(-3)
A 		63
B 61.7
(2.9)
P 		46
(1.2)
P 		62.3
(3)
P 		7.7
(-3)
A 		55
C 42.4
(-1)
P 		53.4
(-0.1)
P 		91.7
(3)
P 		17.7
(-3)
A 		74
avr 56.5
(1.5) 		45.7
(0.5) 		72.5
(3) 		9.2
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 47.2
(-3)
P 		103.2
(3)
P 		61.4
(-1.5)
P 		81.8
(0.7)
P 		90.3
(1.6)
P 		91.7
(1.8)
P 		56
B 105.9
(-0.1)
P 		79.9
(-2.2)
P 		102.1
(-0.4)
P 		70.4
(-3)
P 		121.9
(1.2)
P 		143.5
(3)
P 		73
C 116.1
(-0.2)
P 		85.7
(-3)
P 		94.2
(-2.2)
P 		87.6
(-2.8)
P 		89.1
(-2.7)
P 		149.8
(3)
P 		64
avr 89.7
(-1.8) 		89.6
(-1.8) 		85.9
(-2.3) 		79.9
(-3) 		100.4
(-0.5) 		128.3
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17738
Sequence Type Exemplar sequence
Representative Public ID F02C12.1 NCBI
Target Description F02C12.1 /REP_DB=WormBase Gene ID /WP=CE18568 /TR=Q19107 /GB=CAA91022.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077829(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077829 NCBI Caenorhabditis elegans F02C12.1 (F02C12.1) mRNA, complete cds. 11/11 None
SNAP00000017012 ENSEMBL cdna:SNAP chromosome:CEL140:X:13402013:13406212:1 11/11 None
GENEFINDER00000017018 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13402013:13406212:1 11/11 None
F02C12.1 ENSEMBL cdna:known chromosome:CEL140:X:13402013:13406333:1 gene:F02C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13402012-13406212(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02C12.1
Entrez Gene 181461 Entrez gene
SwissProt Q19107 EMBL-EBI
WormBase CE31465 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91022 Hypothetical protein F02C12.1 [Caenorhabditis elegans] ref|NP_510230.2| F02C12.1 [Caenorhabditis elegans] 0.0
blast CAE63376 Hypothetical protein CBG07789 [Caenorhabditis briggsae] 0.0
blast XP_395881 PREDICTED: similar to CG1907-PA [Apis mellifera] 8.0E-25
blast XP_395881 PREDICTED: similar to CG1907-PA [Apis mellifera] 9.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510230.2 3 381-403,447-469,482-504
F02C12.1 3 381-403,447-469,482-504
SNAP00000017012 2 424-446,459-481
GENEFINDER00000017018 2 455-477,490-512
Sequence
Target Sequence 
>C. ELEGANS:180888_AT
gaagctcacattcatgaacacgacgttccaaaaaaatcaaaaccaatgccatcttcaagt
gttccaaaaatgcaagcaaagcagctgacagtttccgataagaagattgtagaggaacac
ttgcaagcactggatgcccgaggtcaatccaagttgccggctagcaaacaaaaaattaca
acgtacttgaatgttggatgggatgatattgccgcgaaggttaaagcgattttgtccgga
ggcgccggtggggctctcaccgaaaggctcatcgatggcaaaaccaaaaaagtgatcacg
atggataatggtgatgaaggatttatgggtgcaaaggtggagtcgataccaaatggagta
gcaatacgaaaaggtgtcattgatagaattgaaatcacattaaacgatgcaggtgaacct
attccccattttgtggaaggaagtatccgaactggaacagaacaaggagttgtgagaatt
cgtctcgaaaatcgcggaatcttgggaaatatacgtgcaaaaccaaaagtacgaatgtac
aaagacaattcgtcaacgggagtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCACATTCATGAACACGACG 317 343 1876 Antisense
ACCAATGCCATCTTCAAGTGTTCCA 296 85 1917 Antisense
AGCAGCTGACAGTTTCCGATAAGAA 366 77 1955 Antisense
GAACACTTGCAAGCACTGGATGCCC 539 351 1990 Antisense
GCACTGGATGCCCGAGGTCAATCCA 406 315 2002 Antisense
GTCAATCCAAGTTGCCGGCTAGCAA 466 463 2018 Antisense
GATGGGATGATATTGCCGCGAAGGT 206 407 2072 Antisense
GTTAAAGCGATTTTGTCCGGAGGCG 79 447 2095 Antisense
CTCTCACCGAAAGGCTCATCGATGG 537 229 2129 Antisense
GATGCAGGTGAACCTATTCCCCATT 644 409 2281 Antisense
AAGACAATTCGTCAACGGGAGTCGA 335 151 2417 Antisense
Sequence Source Affymetrix Proprietary Database