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[180887_at]

Description D1014.4 /REP_DB=WormBase Gene ID /WP=CE07006 /TR=Q18922 /GB=AAA96288.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 3.2
(-3)
A 		10.3
(-1.2)
A 		10.6
(-1.1)
A 		26.3
(3)
A 		23
B 27.3
(2.2)
A 		3.7
(-3)
A 		12.2
(-1.1)
A 		31
(3)
A 		27
C 4.1
(-3)
A 		8.6
(-2.3)
A 		11.5
(-1.9)
A 		42.8
(3)
A 		39
avr 11.5
(-2.1) 		7.5
(-3) 		11.4
(-2.1) 		33.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.1
(-2.8)
A 		5.2
(-1.7)
A 		19.1
(3)
A 		1.5
(-3)
A 		2.8
(-2.6)
A 		2.5
(-2.7)
A 		18
B 3.4
(-1.8)
A 		11.2
(2)
A 		13.2
(3)
A 		4.4
(-1.3)
A 		0.9
(-3)
A 		1.8
(-2.6)
A 		12
C 2.6
(-2.7)
A 		7.8
(-1.2)
A 		2.8
(-2.7)
A 		2.6
(-2.7)
A 		22.6
(3)
A 		1.7
(-3)
A 		21
avr 2.7
(-2.6) 		8.1
(0.8) 		11.7
(3) 		2.8
(-2.5) 		8.8
(1.2) 		2
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-3)
A 		2.2
(-0.7)
A 		2.8
(0.7)
A 		3.8
(3)
A 		3
B 8.7
(3)
A 		0.9
(-3)
A 		2.8
(-1.5)
A 		6.6
(1.4)
A 		8
C 1.4
(-3)
A 		2.5
(-1.9)
A 		4
(-0.3)
A 		7.2
(3)
A 		6
avr 3.8
(-0.2) 		1.9
(-3) 		3.2
(-1.1) 		5.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.8
(-0.8)
A 		4.2
(3)
A 		0.4
(-3)
A 		0.8
(-2.4)
A 		0.6
(-2.7)
A 		4
B 1.2
(-1.5)
A 		3.7
(3)
A 		3.2
(2.1)
A 		1.2
(-1.5)
A 		0.4
(-3)
A 		0.7
(-2.5)
A 		3
C 1
(-2.6)
A 		2.4
(-1.3)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		7.3
(3)
A 		0.6
(-2.9)
A 		7
avr 0.9
(-2.2) 		2.6
(2.5) 		2.7
(2.7) 		0.7
(-2.7) 		2.8
(3) 		0.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11316
Sequence Type Exemplar sequence
Representative Public ID D1014.4 NCBI
Target Description D1014.4 /REP_DB=WormBase Gene ID /WP=CE07006 /TR=Q18922 /GB=AAA96288.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072699 NCBI Caenorhabditis elegans D1014.4 (D1014.4) mRNA, complete cds. 11/11 None
D1014.4 ENSEMBL cdna:known chromosome:CEL140:V:8136029:8138664:1 gene:D1014.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031801 4/11 Cross Hyb Matching Probes None
GENEFINDER00000031811 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8136029-8138665(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1014.4
Entrez Gene 183896 Entrez gene
SwissProt Q18922 EMBL-EBI
WormBase CE07006 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505100 D1014.4 [Caenorhabditis elegans] gb|AAA96288.1| Hypothetical protein D1014.4 [Caenorhabditis elegans] 4.0E-93
blast CAE66121 Hypothetical protein CBG11345 [Caenorhabditis briggsae] 8.0E-31
Sequence
Target Sequence 
>C. ELEGANS:180887_AT
ggaaaacgaagtacgatcatcttaatgaagattatgaaagaataaaaatacggacggaaa
gtctcgaaaatcgattattagatgttgttgaagaaaatgatagaaaagataatgaaaata
gtgagagaattagacaattagatgaggcgttgaaagaatcacaaaaacgagttgaacagt
tggaagcggcttgttttcgatacaaaaaccaagccaaaggggaatttgcaagttctatca
aaagtgaagagaaattagaaaaatctcaacggaaagatgatgaagacaatgagtattcaa
acgaattacaaagtgtacaagaactgagaacaattagtggagaaagtcaaatggctgaac
aagctctagattatattgtcagtaaaacatttaaaaaaattccagtgtcttctcagaaaa
tgtcgagggatattttcaatgtttgctttgttttttcaaacaactcattcattcaatcaa
caagagatgcaatcaattacaggcaaattctagtaatttcatcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAACGAAGTACGATCATCTTAA 234 527 53 Antisense
TACGGACGGAAAGTCTCGAAAATCG 354 357 101 Antisense
TTGGAAGCGGCTTGTTTTCGATACA 394 709 232 Antisense
AAGGGGAATTTGCAAGTTCTATCAA 280 151 269 Antisense
GGCTGAACAAGCTCTAGATTATATT 150 541 405 Antisense
AAAAAAATTCCAGTGTCTTCTCAGA 194 131 445 Antisense
GTGTCTTCTCAGAAAATGTCGAGGG 640 485 457 Antisense
GTCGAGGGATATTTTCAATGTTTGC 77 475 474 Antisense
TTCAATGTTTGCTTTGTTTTTTCAA 520 685 487 Antisense
AACAACTCATTCATTCAATCAACAA 516 135 511 Antisense
GGCAAATTCTAGTAATTTCATCTTT 395 535 554 Antisense
Sequence Source Affymetrix Proprietary Database