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[180886_s_at]

Description C36B1.11 /REP_DB=WormBase Gene ID /WP=CE05378 /TR=Q93345 /GB=CAB02276.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 94      6grp_total > 88      4grp_total > 56      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 223.5
(-0.8)
P 		201.2
(-3)
P 		262.9
(3)
P 		262.4
(3)
P 		62
B 198.7
(-3)
P 		267.2
(1.5)
P 		289.9
(3)
P 		218.6
(-1.7)
P 		91
C 241.2
(-0.7)
P 		221.1
(-1.9)
P 		302.8
(3)
P 		203.5
(-3)
P 		99
avr 221.1
(-3) 		229.8
(-2.2) 		285.2
(3) 		228.2
(-2.3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 963
1 2 3 4 5 6 range
A 236
(-3)
P 		278.4
(-2.7)
P 		285.4
(-2.7)
P 		415.2
(-1.8)
P 		582.9
(-0.8)
P 		1166.6
(3)
P 		931
B 209.6
(-3)
P 		204
(-3)
P 		242.4
(-2.7)
P 		231.4
(-2.8)
P 		590.2
(-0.1)
P 		990.9
(3)
P 		787
C 284
(-2.6)
P 		220.8
(-3)
P 		379.4
(-1.9)
P 		313.3
(-2.4)
P 		657.9
(0)
P 		1087.6
(3)
P 		867
avr 243.2
(-2.9) 		234.4
(-3) 		302.4
(-2.5) 		320
(-2.4) 		610.3
(-0.3) 		1081.7
(3) 		847
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 81.4
(3)
P 		43.7
(-2.3)
P 		68.7
(1.2)
P 		38.4
(-3)
P 		43
B 63.4
(1.9)
P 		66
(2.7)
P 		67.2
(3)
P 		46.6
(-3)
P 		21
C 79.8
(0.8)
P 		63.6
(-0.5)
P 		105.5
(3)
P 		34.3
(-3)
P 		71
avr 74.9
(2.2) 		57.8
(-0.3) 		80.5
(3) 		39.8
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 43.5
(-3)
P 		99
(-1.6)
P 		62.2
(-2.5)
P 		105.3
(-1.5)
P 		175.9
(0.3)
P 		284
(3)
P 		241
B 72.9
(-2.7)
P 		67.9
(-2.8)
P 		58.9
(-3)
P 		61.3
(-3)
P 		239.8
(0.5)
P 		369.5
(3)
P 		311
C 105.3
(-2.2)
P 		67.4
(-2.9)
P 		96.6
(-2.3)
P 		63
(-3)
P 		212.9
(-0)
P 		364.1
(3)
P 		301
avr 73.9
(-3) 		78.1
(-2.9) 		72.6
(-3) 		76.5
(-2.9) 		209.5
(0.1) 		339.2
(3) 		267
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180886_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.582
Sequence Type Exemplar sequence
Representative Public ID C36B1.11 NCBI
Target Description C36B1.11 /REP_DB=WormBase Gene ID /WP=CE05378 /TR=Q93345 /GB=CAB02276.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059968 NCBI Caenorhabditis elegans C36B1.11 (C36B1.11) mRNA, complete cds. 11/11 None
GENEFINDER00000022510 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8764113:8765627:-1 11/11 None
SNAP00000022508 ENSEMBL cdna:SNAP chromosome:CEL140:I:8764209:8765816:-1 11/11 None
C36B1.11 ENSEMBL cdna:known chromosome:CEL140:I:8764038:8765695:-1 gene:C36B1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8764077-8765457(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36B1.11
Entrez Gene 172685 Entrez gene
SwissProt Q93345 EMBL-EBI
WormBase CE05378 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02276 Hypothetical protein C36B1.11 [Caenorhabditis elegans] ref|NP_492369.1| C36B1.11 [Caenorhabditis elegans] 1.0E-175
blast CAB02276 Hypothetical protein C36B1.11 [Caenorhabditis elegans] ref|NP_492369.1| C36B1.11 [Caenorhabditis elegans] 1.0E-172
blast CAB63371 Hypothetical protein Y48G10A.2 [Caenorhabditis elegans] ref|NP_493370.1| Y48G10A.2 [Caenorhabditis elegans] 2.0E-57
blast CAB63371 Hypothetical protein Y48G10A.2 [Caenorhabditis elegans] ref|NP_493370.1| Y48G10A.2 [Caenorhabditis elegans] 3.0E-57
blast CAB63371 Hypothetical protein Y48G10A.2 [Caenorhabditis elegans] ref|NP_493370.1| Y48G10A.2 [Caenorhabditis elegans] 4.0E-57
blast CAE66966 Hypothetical protein CBG12360 [Caenorhabditis briggsae] 2.0E-29
Sequence
Target Sequence 
>C. ELEGANS:180886_S_AT
gcgtcaacggcaactcaacgaggctatccaatttattaaatttaatcgtattgaaggcta
ccatcgcgtcaaagagctggctaacaagatgcttgatgcattttatgatgctaatgcgac
aattgagagagactcagaaaatggttctccgcagagcgatgatgatcacttatcagatgt
ttcgcatgaatgtcaaggatcttctcggtcgtctatttcatcaaaaaaatccagtattca
ttctacatcaactactggcacagttatcctgaatcagaatccagacaacgccctttcatg
cagcgaagtctccggaggcgatgaattgaaaaataagagcagcactaatgaaggttacac
cgagagcatgaccgaaactgttatcaccatatcacgccgttttgaaatgtgtattcgtcg
ggaatcaccagaggatgcagtttctcgtattgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTCAACGGCAACTCAACGAGGCT 207 289 441 Antisense
CGTATTGAAGGCTACCATCGCGTCA 549 247 487 Antisense
CATCGCGTCAAAGAGCTGGCTAACA 67 203 502 Antisense
GAAAATGGTTCTCCGCAGAGCGATG 618 353 577 Antisense
TCTTCTCGGTCGTCTATTTCATCAA 458 617 640 Antisense
TGAATCAGAATCCAGACAACGCCCT 325 575 710 Antisense
ACAACGCCCTTTCATGCAGCGAAGT 308 113 725 Antisense
CAGCGAAGTCTCCGGAGGCGATGAA 22 203 741 Antisense
GCATGACCGAAACTGTTATCACCAT 599 309 806 Antisense
TTATCACCATATCACGCCGTTTTGA 634 679 821 Antisense
GAGGATGCAGTTTCTCGTATTGCAG 366 403 871 Antisense
Sequence Source Affymetrix Proprietary Database