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[180885_s_at]

Description T22H2.5A /REP_DB=WormBase Gene ID /WP=CE20098 /TR=O45799 /GB=CAB04755.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 48      4grp_high_8_8 > 33      6grp_total > 38      4grp_total > 47      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 243.3
(3)
P 		211.5
(1.4)
P 		192.1
(0.4)
P 		123.7
(-3)
P 		120
B 250.8
(3)
P 		131.8
(-2.1)
M 		111.6
(-3)
A 		134.9
(-2)
P 		139
C 277.7
(3)
P 		135.8
(-1.7)
P 		95.5
(-3)
P 		171.4
(-0.5)
P 		182
avr 257.3
(3) 		159.7
(-1.7) 		133.1
(-3) 		143.3
(-2.5) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 181.3
(-0.5)
P 		251.7
(3)
P 		184.3
(-0.3)
P 		193.5
(0.1)
P 		129.8
(-3)
P 		218.2
(1.4)
P 		122
B 202.4
(3)
P 		199.9
(2.8)
P 		132.9
(-3)
P 		145.5
(-1.9)
P 		181
(1.2)
P 		194.4
(2.3)
P 		70
C 315.5
(3)
P 		149.1
(-2.3)
P 		194.1
(-0.8)
A 		126.2
(-3)
M 		252.4
(1)
P 		214.7
(-0.2)
P 		189
avr 233.1
(3) 		200.2
(0.5) 		170.4
(-1.8) 		155.1
(-3) 		187.7
(-0.5) 		209.1
(1.2) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 88.6
(3)
P 		45.9
(-0.6)
P 		50.2
(-0.3)
P 		18.1
(-3)
P 		71
B 80
(3)
P 		32.6
(-2.3)
M 		25.9
(-3)
A 		28.7
(-2.7)
P 		54
C 91.9
(3)
P 		39.1
(-2)
P 		33.3
(-2.6)
P 		28.9
(-3)
P 		63
avr 86.8
(3) 		39.2
(-1.6) 		36.5
(-1.9) 		25.2
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 33.4
(-3)
P 		89.5
(3)
P 		40.1
(-2.3)
P 		49.1
(-1.3)
P 		39.2
(-2.4)
P 		53.1
(-0.9)
P 		56
B 70.4
(2.5)
P 		66.5
(2)
P 		32.3
(-3)
P 		38.5
(-2.1)
P 		73.5
(3)
P 		72.5
(2.9)
P 		41
C 116.9
(3)
P 		45.5
(-1.7)
P 		49.4
(-1.4)
A 		25.4
(-3)
M 		81.7
(0.7)
P 		71.9
(0)
P 		92
avr 73.6
(3) 		67.2
(1.9) 		40.6
(-2.5) 		37.7
(-3) 		64.8
(1.5) 		65.8
(1.7) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180885_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1362
Sequence Type Exemplar sequence
Representative Public ID T22H2.5A NCBI
Target Description T22H2.5A /REP_DB=WormBase Gene ID /WP=CE20098 /TR=O45799 /GB=CAB04755.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060576(10), NM_060575(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060576 NCBI Caenorhabditis elegans T22H2.5a (T22H2.5) mRNA, complete cds. 10/11 A 
NM_060575 NCBI Caenorhabditis elegans T22H2.5b (T22H2.5) mRNA, complete cds. 10/11 A 
GENEFINDER00000038048 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11697005:11703607:-1 11/11 None
SNAP00000038040 ENSEMBL cdna:SNAP chromosome:CEL140:I:11697459:11698943:-1 10/11 None
T22H2.5a.2 ENSEMBL cdna:known chromosome:CEL140:I:11696384:11698954:-1 gene:T22H2.5 10/11 None
T22H2.5a.1 ENSEMBL cdna:known chromosome:CEL140:I:11696384:11698952:-1 gene:T22H2.5 10/11 None
T22H2.5b ENSEMBL cdna:known chromosome:CEL140:I:11696865:11698943:-1 gene:T22H2.5 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11697312-11698582(-) 100.0 100.0
Public Domain and Genome References
Ensembl T22H2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04754 Hypothetical protein T22H2.5b [Caenorhabditis elegans] ref|NP_492976.2| T22H2.5b [Caenorhabditis elegans] 1.0E-148
blast CAB04754 Hypothetical protein T22H2.5b [Caenorhabditis elegans] ref|NP_492976.2| T22H2.5b [Caenorhabditis elegans] 1.0E-145
blast CAB04755 Hypothetical protein T22H2.5a [Caenorhabditis elegans] ref|NP_492977.2| T22H2.5a [Caenorhabditis elegans] 1.0E-144
blast CAB04754 Hypothetical protein T22H2.5b [Caenorhabditis elegans] ref|NP_492976.2| T22H2.5b [Caenorhabditis elegans] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038048 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:180885_S_AT
gtgttactacgcgttcgaggagtccggatgctgtgagagacagtgctgtggaccgcaacg
cctaccaagccaaaattgatccacatgctctgaaatttcaaattttccaggaagttctga
ccatcaagcgtgagttcaagtgttgcggaggtggttgctgtggatgcttggcatgcatcg
gatgctgccagcaggaatgtatcatcgagaccccatcgatgggtgttctgggtatcatcc
gtcagcggtgtggatgcatgtcgtcgaattatgatattatggatggagatggaaatgtga
tcttccagattgatggtccatgctgttgcatgctttgcggatgtcaggataaggagtttc
cgatcaaaaccgccaacaacggcacagttgtcggcgcgatcaccaaaaaatggggaggtt
gcttccgagaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTACTACGCGTTCGAGGAGTCC 220 485 29 Antisense
CGAGGAGTCCGGATGCTGTGAGAGA 14 251 44 Antisense
GCCAAAATTGATCCACATGCTCTGA 15 279 97 Antisense
GTGTTGCGGAGGTGGTTGCTGTGGA 47 485 168 Antisense
GGCATGCATCGGATGCTGCCAGCAG 54 537 198 Antisense
GGAATGTATCATCGAGACCCCATCG 615 529 222 Antisense
TCTGGGTATCATCCGTCAGCGGTGT 458 607 255 Antisense
TCAGCGGTGTGGATGCATGTCGTCG 511 623 270 Antisense
GCTGTTGCATGCTTTGCGGATGTCA 213 295 350 Antisense
AACAACGGCACAGTTGTCGGCGCGA 279 133 403 Antisense
AATGGGGAGGTTGCTTCCGAGAGGC 77 163 437 Antisense
Sequence Source Affymetrix Proprietary Database