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[180884_at]

Description T05H4.1 /REP_DB=WormBase Gene ID /WP=CE13269 /TR=O16526 /GB=AAB66008.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 23      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 108.8
(3)
A 		13.7
(-2.7)
A 		9
(-3)
A 		63.9
(0.3)
A 		100
B 72.2
(3)
A 		11.9
(-2.9)
A 		11.2
(-3)
A 		36.1
(-0.6)
A 		61
C 60.9
(-0.9)
A 		43.6
(-3)
A 		58.6
(-1.2)
A 		93.6
(3)
A 		50
avr 80.6
(3) 		23.1
(-3) 		26.3
(-2.7) 		64.5
(1.3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 121.4
(3)
A 		71.7
(-0.7)
A 		44.9
(-2.7)
A 		65.5
(-1.2)
A 		77.5
(-0.3)
A 		41.4
(-3)
A 		80
B 82.1
(3)
A 		68.9
(1.9)
A 		81.9
(3)
A 		10.5
(-3)
A 		63.1
(1.4)
A 		63.3
(1.4)
A 		72
C 36.7
(-1.4)
A 		114.9
(3)
M 		8.3
(-3)
A 		94.2
(1.8)
A 		35.1
(-1.5)
A 		67.2
(0.3)
A 		107
avr 80.1
(2.2) 		85.2
(3) 		45
(-3) 		56.7
(-1.3) 		58.6
(-1) 		57.3
(-1.2) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 39.6
(3)
A 		3
(-2.9)
A 		2.3
(-3)
A 		9.3
(-1.9)
A 		37
B 23
(3)
A 		2.9
(-2.9)
A 		2.6
(-3)
A 		7.7
(-1.5)
A 		20
C 20.1
(2.8)
A 		12.5
(-3)
A 		20.4
(3)
A 		15.8
(-0.5)
A 		8
avr 27.6
(3) 		6.1
(-3) 		8.4
(-2.4) 		10.9
(-1.7) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 22.4
(1.8)
A 		25.5
(3)
A 		9.8
(-3)
A 		16.6
(-0.4)
A 		23.4
(2.2)
A 		10.1
(-2.9)
A 		16
B 28.5
(3)
A 		22.9
(1.7)
A 		19.9
(1)
A 		2.8
(-3)
A 		25.6
(2.3)
A 		23.6
(1.9)
A 		26
C 13.6
(-0.9)
A 		35.1
(3)
M 		2.1
(-3)
A 		18.9
(0.1)
A 		11.3
(-1.3)
A 		22.5
(0.7)
A 		33
avr 21.5
(0.8) 		27.8
(3) 		10.6
(-3) 		12.8
(-2.2) 		20.1
(0.3) 		18.7
(-0.2) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12169
Sequence Type Exemplar sequence
Representative Public ID T05H4.1 NCBI
Target Description T05H4.1 /REP_DB=WormBase Gene ID /WP=CE13269 /TR=O16526 /GB=AAB66008.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072242 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-8) (acl-8) mRNA, complete cds. 11/11 None
SNAP00000016521 ENSEMBL cdna:SNAP chromosome:CEL140:V:6454000:6455466:1 11/11 None
T05H4.1 ENSEMBL cdna:known chromosome:CEL140:V:6453492:6454825:1 gene:T05H4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016525 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6453491-6454825(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol acl-8
Ensembl T05H4.1
Entrez Gene 179031 Entrez gene
SwissProt O16526 EMBL-EBI
WormBase CE13269 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256652_AT phospholipid/glycerol acyltransferase family protein at
CANINE_2:CFAAFFX.8902.1.S1_AT similar to lysocardiolipin acyltransferase isoform 1 cfa
CHICKEN:GGA.7898.1.S1_AT lysocardiolipin acyltransferase gga
CHICKEN:GGAAFFX.21405.1.S1_S_AT lysocardiolipin acyltransferase gga
CHICKEN:GGAAFFX.5719.1.S1_AT lysocardiolipin acyltransferase gga
CHICKEN:GGAAFFX.5721.1.S1_AT lysocardiolipin acyltransferase gga
U133_X3P:HS.14355.0.S1_3P_AT lysocardiolipin acyltransferase hs
HG-U133_PLUS_2:226996_AT lysocardiolipin acyltransferase hs
HG-U133B:226996_AT lysocardiolipin acyltransferase hs
HG-U95E:78505_AT lysocardiolipin acyltransferase hs
HU35KSUBD:RC_AA455668_AT lysocardiolipin acyltransferase hs
HG-U95D:69720_AT Lysocardiolipin acyltransferase hs
MU11KSUBA:AA265096_AT lysocardiolipin acyltransferase mm
MG-U74AV2:95386_AT lysocardiolipin acyltransferase mm
MOE430A:1434690_AT lysocardiolipin acyltransferase mm
MOUSE430A_2:1434690_AT lysocardiolipin acyltransferase mm
MOUSE430_2:1434690_AT lysocardiolipin acyltransferase mm
MU19KSUBA:TC24222_AT PREDICTED: similar to lysocardiolipin acyltransferase isoform 1 [Mus musculus], mRNA sequence mm
MU19KSUBB:TC32809_AT PREDICTED: similar to lysocardiolipin acyltransferase isoform 1 [Mus musculus], mRNA sequence mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504643 ACyLtransferase-like family member (acl-8) [Caenorhabditis elegans] gb|AAB66008.1| Acyltransferase-like protein 8 [Caenorhabditis elegans] 0.0
blast CAE71885 Hypothetical protein CBG18940 [Caenorhabditis briggsae] 1.0E-176
blast CAE71885 Hypothetical protein CBG18940 [Caenorhabditis briggsae] 1.0E-108
blast NP_504643 ACyLtransferase-like family member (acl-8) [Caenorhabditis elegans] gb|AAB66008.1| Acyltransferase-like protein 8 [Caenorhabditis elegans] 1.0E-105
blast AAB04844 Acyltransferase-like protein 9 [Caenorhabditis elegans] ref|NP_504644.1| ACyLtransferase-like family member (acl-9) [Caenorhabditis elegans] 6.0E-86
blast AAB04844 Acyltransferase-like protein 9 [Caenorhabditis elegans] ref|NP_504644.1| ACyLtransferase-like family member (acl-9) [Caenorhabditis elegans] 3.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 2.5E-34
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 1.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504643.1 3 9-31,46-68,303-325
T05H4.1 3 9-31,46-68,303-325
SNAP00000016521 2 155-177,187-209
Sequence
Target Sequence 
>C. ELEGANS:180884_AT
gattcttcttttcgccgagggaactgacaaaggagagcgagcaactcgtttgagcgacgc
ttttgccgataaaaatggattaccgagatatgagtatgtattgcacccgcgaacgacggg
attcaaatttttgatggaattgatgaaaaaagagaattatataaaatacgtttatgatct
cacaattgcgtacagtggaactatagtcgacacagaagcaaaacttttggctggcaattt
tccagataaagttcacttagatgttaaaaagtacaagctagacgaaattccaacaggaga
agggtgcgagaaatggctcaccgatttatgggcaacaaaggagaagcgactgaaaaagtt
ttacgagcaggaagagcgactagaagcaagtggtgatagattcgagtggccggagacaac
tactggtatcggatactacgtggcgtttgccttttgggttctcgcatcgcttatttggat
gggtgccatctattcgctgctatgggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTTCTTTTCGCCGAGGGAACT 610 429 495 Antisense
GCGAGCAACTCGTTTGAGCGACGCT 55 291 531 Antisense
TTGAGCGACGCTTTTGCCGATAAAA 495 705 544 Antisense
TATGAGTATGTATTGCACCCGCGAA 242 657 583 Antisense
TGCACCCGCGAACGACGGGATTCAA 584 571 596 Antisense
TTATGATCTCACAATTGCGTACAGT 103 679 666 Antisense
AATGGCTCACCGATTTATGGGCAAC 13 163 806 Antisense
GTGGCCGGAGACAACTACTGGTATC 15 491 900 Antisense
GGATACTACGTGGCGTTTGCCTTTT 279 507 925 Antisense
GGTTCTCGCATCGCTTATTTGGATG 291 507 951 Antisense
TGCCATCTATTCGCTGCTATGGGTC 340 585 978 Antisense
Sequence Source Affymetrix Proprietary Database