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[180883_at]

Description Y42A5A.3 /REP_DB=WormBase Gene ID /WP=CE20257 /TR=Q9XWZ5 /GB=CAA21486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 75      6grp_total > 79      4grp_total > 25      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 838
1 2 3 4 range
A 481
(-3)
P 		1012.2
(0.8)
P 		937.6
(0.3)
P 		1319
(3)
P 		838
B 490
(-3)
P 		945.7
(2.2)
P 		876.7
(1.4)
P 		1020.4
(3)
P 		530
C 650.3
(-3)
P 		1029.1
(1.5)
P 		917.7
(0.1)
P 		1160.5
(3)
P 		510
avr 540.4
(-3) 		995.7
(1.4) 		910.7
(0.5) 		1166.6
(3) 		626

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 643.6
(-3)
P 		956.4
(3)
P 		882.5
(1.6)
P 		808.6
(0.2)
P 		720.1
(-1.5)
P 		807
(0.1)
P 		313
B 715.5
(-1.5)
P 		1099.2
(3)
P 		601.7
(-2.8)
P 		585.1
(-3)
P 		1005.8
(1.9)
P 		1078.7
(2.8)
P 		514
C 809.3
(-1)
P 		953.7
(0.8)
P 		652.6
(-3)
P 		867
(-0.3)
P 		939.4
(0.6)
P 		1131.1
(3)
P 		479
avr 722.8
(-2.8) 		1003.1
(2.9) 		712.3
(-3) 		753.6
(-2.2) 		888.4
(0.6) 		1005.6
(3) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 175.1
(-3)
P 		219.7
(0.8)
P 		245.1
(3)
P 		193.1
(-1.5)
P 		70
B 156.3
(-3)
P 		233.6
(3)
P 		203.2
(0.6)
P 		217.4
(1.7)
P 		77
C 215.3
(-2.1)
P 		295.9
(1.8)
P 		319.8
(3)
P 		195.7
(-3)
P 		124
avr 182.2
(-3) 		249.7
(2.5) 		256
(3) 		202.1
(-1.4) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 118.6
(-3)
P 		340.1
(3)
P 		192.2
(-1)
P 		205.1
(-0.7)
P 		217.3
(-0.3)
P 		196.5
(-0.9)
P 		222
B 249
(-0.6)
P 		365.9
(2)
P 		146.1
(-3)
P 		155
(-2.8)
P 		408.7
(3)
P 		402.2
(2.9)
P 		263
C 300
(0.8)
P 		291
(0.5)
P 		166.1
(-3)
P 		174.3
(-2.8)
P 		304
(0.9)
P 		378.6
(3)
P 		213
avr 222.5
(-1) 		332.3
(3) 		168.1
(-3) 		178.1
(-2.6) 		310
(2.2) 		325.8
(2.8) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180883_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14280
Sequence Type Exemplar sequence
Representative Public ID Y42A5A.3 NCBI
Target Description Y42A5A.3 /REP_DB=WormBase Gene ID /WP=CE20257 /TR=Q9XWZ5 /GB=CAA21486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073421(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073421 NCBI Caenorhabditis elegans Y42A5A.3 (Y42A5A.3) mRNA, complete cds. 11/11 None
SNAP00000034854 ENSEMBL cdna:SNAP chromosome:CEL140:V:11098116:11098554:-1 11/11 None
Y42A5A.3 ENSEMBL cdna:known chromosome:CEL140:V:11098032:11098561:-1 gene:Y42A5A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11098115-11098554(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y42A5A.3
Entrez Gene 189840 Entrez gene
SwissProt Q9XWZ5 EMBL-EBI
WormBase CE20257 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21486 Hypothetical protein Y42A5A.3 [Caenorhabditis elegans] ref|NP_505822.1| Y42A5A.3 [Caenorhabditis elegans] 6.0E-61
blast CAE75150 Hypothetical protein CBG23084 [Caenorhabditis briggsae] 8.0E-41
blast CAE57985 Hypothetical protein CBG01048 [Caenorhabditis briggsae] 3.0E-12
Sequence
Target Sequence 
>C. ELEGANS:180883_AT
gttttctaatacttctggtggttcaaggatcacatgcgaattctgttcttagtcggtatt
ttaatgaagaagatggcgtaccactcgcaagacatcctttagaagatgcaagagtttccg
atgcggacgtcggaatgaaatcggatctattcatcggaacattcggtggacgcccaattg
taacaagacaagaaaatactttcatcgatcaggatggagttcctgttccgatgctgcctt
atcaaaaaacatatcgcaactctgatcatctgtcagcacgcagcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTCTAATACTTCTGGTGGTTCA 574 447 32 Antisense
GCGAATTCTGTTCTTAGTCGGTATT 122 289 67 Antisense
GAAGAAGATGGCGTACCACTCGCAA 124 341 97 Antisense
TACCACTCGCAAGACATCCTTTAGA 473 649 110 Antisense
GATGCAAGAGTTTCCGATGCGGACG 265 413 136 Antisense
GAAATCGGATCTATTCATCGGAACA 192 363 168 Antisense
TCATCGGAACATTCGGTGGACGCCC 573 621 182 Antisense
GGTGGACGCCCAATTGTAACAAGAC 449 499 196 Antisense
TGTTCCGATGCTGCCTTATCAAAAA 52 563 255 Antisense
ACATATCGCAACTCTGATCATCTGT 524 105 280 Antisense
GATCATCTGTCAGCACGCAGCAAAT 6 421 295 Antisense
Sequence Source Affymetrix Proprietary Database