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[180882_s_at]

Description F18C5.5 /REP_DB=WormBase Gene ID /WP=CE02654 /TR=Q19548 /GB=AAA68413.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 40.9
(-3)
A 		439.2
(3)
P 		421
(2.7)
P 		74.1
(-2.5)
A 		398
B 38
(-3)
A 		278.7
(1)
P 		395.8
(3)
P 		62.6
(-2.6)
A 		358
C 42.3
(-3)
A 		432.9
(3)
P 		423.4
(2.9)
P 		52.7
(-2.8)
A 		391
avr 40.4
(-3) 		383.6
(2.5) 		413.4
(3) 		63.1
(-2.6) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 95.1
(-2.3)
A 		358.3
(1.2)
P 		231.9
(-0.5)
P 		497.1
(3)
P 		318.4
(0.7)
P 		40.6
(-3)
M 		457
B 89.9
(-2.7)
A 		262.3
(-0)
P 		189.2
(-1.2)
P 		461.4
(3)
P 		378.3
(1.7)
P 		69.2
(-3)
P 		392
C 62.9
(-3)
A 		315.7
(0.6)
P 		249.4
(-0.4)
P 		485.2
(3)
P 		283.7
(0.1)
P 		64.9
(-3)
P 		422
avr 82.6
(-2.7) 		312.1
(0.6) 		223.5
(-0.7) 		481.2
(3) 		326.8
(0.8) 		58.2
(-3) 		423
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 14.9
(-2.8)
A 		95.3
(2.1)
P 		110.1
(3)
P 		10.8
(-3)
A 		99
B 12.1
(-3)
A 		68.8
(1.3)
P 		91.7
(3)
P 		13.3
(-2.9)
A 		80
C 14
(-2.8)
A 		124.5
(2)
P 		147.6
(3)
P 		8.9
(-3)
A 		139
avr 13.7
(-2.8) 		96.2
(1.8) 		116.5
(3) 		11
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 17.5
(-2.6)
A 		127.4
(3)
P 		50.5
(-0.9)
P 		126.1
(2.9)
P 		96.1
(1.4)
P 		9.9
(-3)
M 		118
B 31.3
(-2.7)
A 		87.3
(-0.1)
P 		45.9
(-2.1)
P 		122.2
(1.5)
P 		153.7
(3)
P 		25.8
(-3)
P 		128
C 23.3
(-2.9)
A 		96.3
(2.9)
P 		63.5
(0.3)
P 		97.6
(3)
P 		91.8
(2.5)
P 		21.7
(-3)
P 		76
avr 24
(-2.7) 		103.7
(2.3) 		53.3
(-0.9) 		115.3
(3) 		113.9
(2.9) 		19.1
(-3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180882_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4618
Sequence Type Exemplar sequence
Representative Public ID F18C5.5 NCBI
Target Description F18C5.5 /REP_DB=WormBase Gene ID /WP=CE02654 /TR=Q19548 /GB=AAA68413.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062925 NCBI Caenorhabditis elegans F18C5.5 (F18C5.5) mRNA, complete cds. 11/11 None
SNAP00000016660 ENSEMBL cdna:SNAP chromosome:CEL140:II:6565489:6566606:-1 11/11 None
GENEFINDER00000016665 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6565489:6566606:-1 11/11 None
F18C5.5 ENSEMBL cdna:known chromosome:CEL140:II:6565441:6566606:-1 gene:F18C5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y51B9A.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6565485-6566603(-) 96.26 100.0
Public Domain and Genome References
Gene Title
Ensembl F18C5.5
Entrez Gene 174084 Entrez gene
SwissProt Q19548 EMBL-EBI
WormBase CE02654 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68413 Hypothetical protein F18C5.5 [Caenorhabditis elegans] ref|NP_495326.1| F18C5.5 [Caenorhabditis elegans] 1.0E-101
blast CAE59346 Hypothetical protein CBG02691 [Caenorhabditis briggsae] 3.0E-73
Sequence
Target Sequence 
>C. ELEGANS:180882_S_AT
ggagatgttcgaagatcacccctcccatcattatcggcatatgctccttttgctaaatct
cttcgtccagcttctacaggaatccgacgtgctccagcagttgttacacttccagctcaa
aaagctaatcgttcagtgaaaagagctccagctaaaccacttccaatgacacttccactt
cttccaccacttcttccacttccacaattcattccagtacctgtaccagtcctgtctgca
gaaggccttccaactcttccaactcttgctccacatactttcccaactttcactccaatt
cctggaatgccaacaatgcctgcattgacaatgccaccaagtttccaacgtcttcttgga
atcacaactacaactatgaaaccagctgaaaaagctatggaaactgttcaaactgaagaa
tctgataatgacacaacgtccgaagctagagctcatagcgccccaacatacagcaaagat
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGATGTTCGAAGATCACCCCTCC 277 519 100 Antisense
TTATCGGCATATGCTCCTTTTGCTA 496 679 130 Antisense
TTTGCTAAATCTCTTCGTCCAGCTT 26 667 148 Antisense
TCTACAGGAATCCGACGTGCTCCAG 90 613 172 Antisense
TGCTCCAGCAGTTGTTACACTTCCA 107 583 189 Antisense
TAAACCACTTCCAATGACACTTCCA 364 639 252 Antisense
TCCACTTCCACAATTCATTCCAGTA 209 589 294 Antisense
TACCAGTCCTGTCTGCAGAAGGCCT 129 651 323 Antisense
TGACAATGCCACCAAGTTTCCAACG 630 571 425 Antisense
GACACAACGTCCGAAGCTAGAGCTC 138 367 529 Antisense
AGCGCCCCAACATACAGCAAAGATC 370 81 556 Antisense
Sequence Source Affymetrix Proprietary Database