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[180881_at]

Description T08G2.2 /REP_DB=WormBase Gene ID /WP=CE07472 /TR=Q22346 /GB=AAB52492.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.8
(-3)
A 		3.5
(-0.1)
A 		3.5
(-0.1)
A 		5.3
(3)
A 		4
B 10
(3)
A 		1.8
(-3)
A 		3
(-2.1)
A 		4.1
(-1.3)
A 		8
C 3.2
(-2.5)
A 		2.7
(-2.6)
A 		1.6
(-3)
A 		20.2
(3)
A 		19
avr 5
(-1.1) 		2.7
(-3) 		2.7
(-3) 		9.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.2
(-1.1)
A 		1.3
(-3)
A 		1.7
(-2.1)
A 		1.7
(-2.1)
A 		3.7
(2.1)
A 		4.1
(3)
A 		3
B 1.8
(-2.5)
A 		7.2
(3)
A 		4.2
(-0.1)
A 		1.3
(-3)
A 		1.5
(-2.8)
A 		3.9
(-0.4)
A 		6
C 1.9
(-2.8)
A 		12.9
(-0.2)
A 		26.5
(3)
A 		2.1
(-2.8)
A 		1.1
(-3)
A 		1.1
(-3)
A 		25
avr 2
(-2.8) 		7.1
(0.6) 		10.8
(3) 		1.7
(-3) 		2.1
(-2.7) 		3
(-2.1) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.7
(-3)
A 		0.8
(0)
A 		0.9
(3)
A 		0.8
(0)
A 		0
B 3.2
(3)
A 		0.4
(-3)
A 		0.7
(-2.4)
A 		0.9
(-1.9)
A 		3
C 1.1
(-1.8)
A 		0.8
(-2.4)
A 		0.5
(-3)
A 		3.4
(3)
A 		3
avr 1.7
(3) 		0.7
(-3) 		0.7
(-3) 		1.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.5
(-2.1)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1.1
(3)
A 		1
(2.1)
A 		1
B 0.6
(-2.1)
A 		2.4
(3)
A 		1
(-1)
A 		0.3
(-3)
A 		0.6
(-2.1)
A 		1.5
(0.4)
A 		2
C 0.7
(-2.7)
A 		3.9
(0.3)
A 		6.7
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		6
avr 0.6
(-2.5) 		2.3
(2) 		2.7
(3) 		0.4
(-3) 		0.7
(-2.2) 		1
(-1.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17778
Sequence Type Exemplar sequence
Representative Public ID T08G2.2 NCBI
Target Description T08G2.2 /REP_DB=WormBase Gene ID /WP=CE07472 /TR=Q22346 /GB=AAB52492.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078386 NCBI Caenorhabditis elegans T08G2.2 (T08G2.2) mRNA, complete cds. 11/11 None
SNAP00000025190 ENSEMBL cdna:SNAP chromosome:CEL140:X:17205341:17209277:-1 11/11 None
GENEFINDER00000025193 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17205341:17206791:-1 10/11 None
T08G2.2 ENSEMBL cdna:known chromosome:CEL140:X:17205341:17209277:-1 gene:T08G2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17205340-17209277(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08G2.2
Entrez Gene 188291 Entrez gene
SwissProt Q22346 EMBL-EBI
WormBase CE35763 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52492 Hypothetical protein T08G2.2 [Caenorhabditis elegans] ref|NP_510787.2| T08G2.2 [Caenorhabditis elegans] 0.0
blast CAE69692 Hypothetical protein CBG15947 [Caenorhabditis briggsae] 0.0
blast AAB52492 Hypothetical protein T08G2.2 [Caenorhabditis elegans] ref|NP_510787.2| T08G2.2 [Caenorhabditis elegans] 1.0E-123
blast CAE69692 Hypothetical protein CBG15947 [Caenorhabditis briggsae] 1.0E-113
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.4E-79
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510787.2 1 5-22
T08G2.2 1 5-22
SNAP00000025190 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:180881_AT
atcgtacggaataccatgttcgctagaaatttcttgcaaaagtggggagactgggagttc
acacaaccatcaaactggaacggagctgacaatggtgttcttcagattcacattttaaaa
accgtcctcccatatgcatcacaagaaatcaaaaattgcgacaagtactggcacaactcg
acgggttatgacacatatatggcatacgtcacttgttgcaagctggctctaggtgcaaca
cggttatggcctggaaaagtacggatattccgaagagctcacggatgggttcgagatggg
tttctgtcaacggatagattttgcgaaaaagacttcatgttccatggatggaaaaataat
gaagttggattcaaaggatgggagagtccgtttccgaaaaacttgaacgtaagtctctgc
ggaaacggtctggaaggctgggagtatcgaccatttaagaacgtcacttgcgaaagtatc
cggataactcttgccaatttcgagaagagtagtggtaggaatttcccgaaagaagctcgt
gtaatacctcacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTACGGAATACCATGTTCGCTA 271 33 502 Antisense
GAGACTGGGAGTTCACACAACCATC 98 389 548 Antisense
GTCCTCCCATATGCATCACAAGAAA 319 477 625 Antisense
GACAAGTACTGGCACAACTCGACGG 204 365 661 Antisense
ACGTCACTTGTTGCAAGCTGGCTCT 116 95 707 Antisense
AGGTGCAACACGGTTATGGCCTGGA 344 57 732 Antisense
GGGTTCGAGATGGGTTTCTGTCAAC 268 497 788 Antisense
GTAAGTCTCTGCGGAAACGGTCTGG 68 463 910 Antisense
AACGGTCTGGAAGGCTGGGAGTATC 542 103 925 Antisense
TATCCGGATAACTCTTGCCAATTTC 560 657 978 Antisense
AGAAGCTCGTGTAATACCTCACCTC 132 75 1032 Antisense
Sequence Source Affymetrix Proprietary Database